Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RPAP1Q9BWH6 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
RPAP1Q9BWH6 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
RPAP1Q9BWH6 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
RPAP1Q9BWH6 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
RPAP1Q9BWH6 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RPAP1Q9BWH6 AC016734.2-201ENST00000624325 1377 ntBASIC22.34■■□□□ 1.17
RPAP1Q9BWH6 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RPAP1Q9BWH6 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RPAP1Q9BWH6 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC22.34■■□□□ 1.17
RPAP1Q9BWH6 GRAMD4P1-201ENST00000435181 1110 ntBASIC22.34■■□□□ 1.17
RPAP1Q9BWH6 AP002383.4-201ENST00000442518 975 ntBASIC22.34■■□□□ 1.17
RPAP1Q9BWH6 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC22.34■■□□□ 1.17
RPAP1Q9BWH6 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC22.34■■□□□ 1.17
RPAP1Q9BWH6 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC22.34■■□□□ 1.17
RPAP1Q9BWH6 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC22.34■■□□□ 1.17
RPAP1Q9BWH6 MIR3917-201ENST00000580971 93 ntBASIC22.34■■□□□ 1.17
RPAP1Q9BWH6 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC22.34■■□□□ 1.17
RPAP1Q9BWH6 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RPAP1Q9BWH6 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RPAP1Q9BWH6 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC22.34■■□□□ 1.17
RPAP1Q9BWH6 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
RPAP1Q9BWH6 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC22.33■■□□□ 1.17
RPAP1Q9BWH6 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC22.33■■□□□ 1.17
RPAP1Q9BWH6 AL162741.1-201ENST00000565563 1558 ntBASIC22.33■■□□□ 1.17
RPAP1Q9BWH6 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
RPAP1Q9BWH6 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
RPAP1Q9BWH6 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
RPAP1Q9BWH6 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC22.33■■□□□ 1.17
RPAP1Q9BWH6 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
RPAP1Q9BWH6 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC22.33■■□□□ 1.17
RPAP1Q9BWH6 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC22.33■■□□□ 1.17
RPAP1Q9BWH6 BX276092.5-203ENST00000456199 560 ntBASIC22.33■■□□□ 1.17
RPAP1Q9BWH6 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC22.33■■□□□ 1.17
RPAP1Q9BWH6 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC22.33■■□□□ 1.17
RPAP1Q9BWH6 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC22.33■■□□□ 1.17
RPAP1Q9BWH6 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.17
RPAP1Q9BWH6 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC22.33■■□□□ 1.17
RPAP1Q9BWH6 PRELID1P1-202ENST00000567272 903 ntBASIC22.33■■□□□ 1.17
RPAP1Q9BWH6 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC22.33■■□□□ 1.17
RPAP1Q9BWH6 MIR3652-201ENST00000579335 131 ntBASIC22.33■■□□□ 1.17
RPAP1Q9BWH6 IRF5-214ENST00000613821 595 ntTSL 5 BASIC22.33■■□□□ 1.17
RPAP1Q9BWH6 SPEG-225ENST00000617028 815 ntTSL 5 BASIC22.33■■□□□ 1.17
RPAP1Q9BWH6 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC22.33■■□□□ 1.17
RPAP1Q9BWH6 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
RPAP1Q9BWH6 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.16
RPAP1Q9BWH6 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC22.33■■□□□ 1.16
RPAP1Q9BWH6 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC22.33■■□□□ 1.16
RPAP1Q9BWH6 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 AC090164.3-201ENST00000610780 2143 ntBASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 KRT18P41-201ENST00000518924 1277 ntBASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 SDHD-206ENST00000528182 754 ntTSL 3 BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 AC092329.2-201ENST00000598402 547 ntBASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 AL136038.4-201ENST00000603606 1261 ntBASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 AC112497.1-201ENST00000624824 639 ntBASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC22.32■■□□□ 1.16
RPAP1Q9BWH6 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
RPAP1Q9BWH6 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC22.31■■□□□ 1.16
RPAP1Q9BWH6 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC22.31■■□□□ 1.16
RPAP1Q9BWH6 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC22.31■■□□□ 1.16
RPAP1Q9BWH6 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RPAP1Q9BWH6 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
RPAP1Q9BWH6 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
RPAP1Q9BWH6 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
RPAP1Q9BWH6 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC22.31■■□□□ 1.16
RPAP1Q9BWH6 AC135050.7-201ENST00000624508 2218 ntBASIC22.31■■□□□ 1.16
RPAP1Q9BWH6 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC22.31■■□□□ 1.16
RPAP1Q9BWH6 AC111152.3-201ENST00000569699 673 ntBASIC22.31■■□□□ 1.16
RPAP1Q9BWH6 AL157888.1-201ENST00000631930 593 ntBASIC22.31■■□□□ 1.16
RPAP1Q9BWH6 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC22.31■■□□□ 1.16
RPAP1Q9BWH6 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
RPAP1Q9BWH6 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
RPAP1Q9BWH6 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms