Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 AC233702.5-201ENST00000584107 538 ntBASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 Z99916.2-201ENST00000604037 246 ntBASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 MYC-208ENST00000641036 567 ntBASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 GAS2L1P1-201ENST00000420145 1480 ntBASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 AC139713.2-201ENST00000641328 2723 ntBASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 PRORSD1P-202ENST00000563365 2154 ntBASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.34
DEPDC4Q8N2C3 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
DEPDC4Q8N2C3 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
DEPDC4Q8N2C3 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
DEPDC4Q8N2C3 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
DEPDC4Q8N2C3 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
DEPDC4Q8N2C3 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
DEPDC4Q8N2C3 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC17.14■□□□□ 0.33
DEPDC4Q8N2C3 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
DEPDC4Q8N2C3 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
DEPDC4Q8N2C3 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC17.14■□□□□ 0.33
DEPDC4Q8N2C3 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC17.14■□□□□ 0.33
DEPDC4Q8N2C3 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.14■□□□□ 0.33
DEPDC4Q8N2C3 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.14■□□□□ 0.33
DEPDC4Q8N2C3 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
DEPDC4Q8N2C3 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
DEPDC4Q8N2C3 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
DEPDC4Q8N2C3 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.14■□□□□ 0.33
DEPDC4Q8N2C3 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
DEPDC4Q8N2C3 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
DEPDC4Q8N2C3 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
DEPDC4Q8N2C3 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
DEPDC4Q8N2C3 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.14■□□□□ 0.33
DEPDC4Q8N2C3 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 HEIH-201ENST00000623091 1652 ntBASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 MDFI-202ENST00000373050 809 ntTSL 2 BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 LINC00896-202ENST00000609602 2128 ntBASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.13■□□□□ 0.33
DEPDC4Q8N2C3 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 GOLGA6L5P-202ENST00000515341 1828 ntBASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 AC134043.2-201ENST00000624206 2238 ntBASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms