Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 AC068880.1-201ENST00000507289 2297 ntBASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 AC093525.10-201ENST00000625130 1569 ntBASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 AL645929.1-201ENST00000420084 975 ntBASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 AC034232.1-201ENST00000506026 1064 ntBASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 AC024243.1-201ENST00000609234 778 ntBASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC21.36■■□□□ 1.01
CCDC144BQ3MJ40 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC21.35■■□□□ 1.01
CCDC144BQ3MJ40 USP39-202ENST00000409025 1946 ntTSL 5 BASIC21.35■■□□□ 1.01
CCDC144BQ3MJ40 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC144BQ3MJ40 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC144BQ3MJ40 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC21.35■■□□□ 1.01
CCDC144BQ3MJ40 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC144BQ3MJ40 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC144BQ3MJ40 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC144BQ3MJ40 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC144BQ3MJ40 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC144BQ3MJ40 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC21.35■■□□□ 1.01
CCDC144BQ3MJ40 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC21.35■■□□□ 1.01
CCDC144BQ3MJ40 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC21.35■■□□□ 1.01
CCDC144BQ3MJ40 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC21.35■■□□□ 1.01
CCDC144BQ3MJ40 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC144BQ3MJ40 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC144BQ3MJ40 AC036111.1-201ENST00000533973 1582 ntBASIC21.35■■□□□ 1.01
CCDC144BQ3MJ40 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
CCDC144BQ3MJ40 AP000997.3-201ENST00000623333 2250 ntBASIC21.35■■□□□ 1.01
CCDC144BQ3MJ40 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC144BQ3MJ40 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CCDC144BQ3MJ40 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
CCDC144BQ3MJ40 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC21.35■■□□□ 1.01
CCDC144BQ3MJ40 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
CCDC144BQ3MJ40 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
CCDC144BQ3MJ40 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
CCDC144BQ3MJ40 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC144BQ3MJ40 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC144BQ3MJ40 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC21.34■■□□□ 1.01
CCDC144BQ3MJ40 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC21.34■■□□□ 1.01
CCDC144BQ3MJ40 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC21.34■■□□□ 1.01
CCDC144BQ3MJ40 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC144BQ3MJ40 NOC2LP2-201ENST00000407594 1944 ntBASIC21.34■■□□□ 1.01
CCDC144BQ3MJ40 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC144BQ3MJ40 AL023284.2-201ENST00000405850 579 ntBASIC21.34■■□□□ 1.01
CCDC144BQ3MJ40 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC144BQ3MJ40 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC21.34■■□□□ 1.01
CCDC144BQ3MJ40 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC21.34■■□□□ 1.01
CCDC144BQ3MJ40 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC21.34■■□□□ 1.01
CCDC144BQ3MJ40 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
CCDC144BQ3MJ40 AC092119.3-201ENST00000612618 583 ntBASIC21.34■■□□□ 1.01
CCDC144BQ3MJ40 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC21.34■■□□□ 1.01
CCDC144BQ3MJ40 VPS72-207ENST00000640458 689 ntTSL 5 BASIC21.34■■□□□ 1.01
CCDC144BQ3MJ40 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
CCDC144BQ3MJ40 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC144BQ3MJ40 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC144BQ3MJ40 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC144BQ3MJ40 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
CCDC144BQ3MJ40 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC144BQ3MJ40 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CCDC144BQ3MJ40 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC144BQ3MJ40 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC144BQ3MJ40 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC144BQ3MJ40 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC21.33■■□□□ 1.01
CCDC144BQ3MJ40 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC144BQ3MJ40 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CCDC144BQ3MJ40 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC21.33■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms