Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 FAM197Y8-203ENST00000450145 560 ntBASIC17.67■□□□□ 0.42
COL28A1Q2UY09 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 AC079602.3-201ENST00000623931 403 ntBASIC17.67■□□□□ 0.42
COL28A1Q2UY09 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
COL28A1Q2UY09 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL28A1Q2UY09 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL28A1Q2UY09 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.66■□□□□ 0.42
COL28A1Q2UY09 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.66■□□□□ 0.42
COL28A1Q2UY09 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
COL28A1Q2UY09 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL28A1Q2UY09 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL28A1Q2UY09 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.66■□□□□ 0.42
COL28A1Q2UY09 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
COL28A1Q2UY09 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL28A1Q2UY09 AC093909.1-201ENST00000504731 1122 ntBASIC17.66■□□□□ 0.42
COL28A1Q2UY09 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
COL28A1Q2UY09 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC17.66■□□□□ 0.42
COL28A1Q2UY09 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.66■□□□□ 0.42
COL28A1Q2UY09 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC17.66■□□□□ 0.42
COL28A1Q2UY09 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC17.66■□□□□ 0.42
COL28A1Q2UY09 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
COL28A1Q2UY09 RNF126P1-202ENST00000569893 925 ntBASIC17.66■□□□□ 0.42
COL28A1Q2UY09 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17.66■□□□□ 0.42
COL28A1Q2UY09 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC17.66■□□□□ 0.42
COL28A1Q2UY09 REXO1L6P-202ENST00000619970 1078 ntBASIC17.66■□□□□ 0.42
COL28A1Q2UY09 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL28A1Q2UY09 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL28A1Q2UY09 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL28A1Q2UY09 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL28A1Q2UY09 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC17.66■□□□□ 0.42
COL28A1Q2UY09 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL28A1Q2UY09 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.66■□□□□ 0.42
COL28A1Q2UY09 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL28A1Q2UY09 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
COL28A1Q2UY09 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 Z82202.1-201ENST00000623446 1880 ntBASIC17.65■□□□□ 0.42
COL28A1Q2UY09 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 AC093484.2-201ENST00000580996 2166 ntBASIC17.65■□□□□ 0.42
COL28A1Q2UY09 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 HNRNPA1P28-201ENST00000424481 961 ntBASIC17.65■□□□□ 0.42
COL28A1Q2UY09 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL28A1Q2UY09 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC17.64■□□□□ 0.42
COL28A1Q2UY09 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC17.64■□□□□ 0.42
COL28A1Q2UY09 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms