Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
ABCA4P78363 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC15.83■□□□□ 0.12
ABCA4P78363 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ABCA4P78363 Z98044.1-201ENST00000632503 1764 ntBASIC15.83■□□□□ 0.12
ABCA4P78363 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
ABCA4P78363 IL9RP2-201ENST00000423948 1312 ntBASIC15.83■□□□□ 0.12
ABCA4P78363 AC022898.2-201ENST00000616822 1312 ntBASIC15.83■□□□□ 0.12
ABCA4P78363 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ABCA4P78363 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC15.83■□□□□ 0.12
ABCA4P78363 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ABCA4P78363 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
ABCA4P78363 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.12
ABCA4P78363 HES2-202ENST00000377836 507 ntTSL 2 BASIC15.83■□□□□ 0.12
ABCA4P78363 FAM197Y8-203ENST00000450145 560 ntBASIC15.83■□□□□ 0.12
ABCA4P78363 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ABCA4P78363 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC15.83■□□□□ 0.12
ABCA4P78363 AC011840.4-201ENST00000578471 627 ntBASIC15.83■□□□□ 0.12
ABCA4P78363 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC15.83■□□□□ 0.12
ABCA4P78363 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC15.83■□□□□ 0.12
ABCA4P78363 AL357033.4-201ENST00000617703 1807 ntBASIC15.83■□□□□ 0.12
ABCA4P78363 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA4P78363 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA4P78363 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
ABCA4P78363 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC15.82■□□□□ 0.12
ABCA4P78363 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA4P78363 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA4P78363 BX842568.4-201ENST00000421222 227 ntBASIC15.82■□□□□ 0.12
ABCA4P78363 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC15.82■□□□□ 0.12
ABCA4P78363 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC15.82■□□□□ 0.12
ABCA4P78363 AL355385.1-201ENST00000606123 409 ntBASIC15.82■□□□□ 0.12
ABCA4P78363 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA4P78363 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA4P78363 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA4P78363 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC15.82■□□□□ 0.12
ABCA4P78363 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA4P78363 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC15.82■□□□□ 0.12
ABCA4P78363 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC15.82■□□□□ 0.12
ABCA4P78363 NFYC-AS1-201ENST00000606277 1687 ntBASIC15.82■□□□□ 0.12
ABCA4P78363 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA4P78363 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA4P78363 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA4P78363 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA4P78363 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC15.82■□□□□ 0.12
ABCA4P78363 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA4P78363 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA4P78363 TLE1-202ENST00000376484 666 ntTSL 3 BASIC15.82■□□□□ 0.12
ABCA4P78363 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
ABCA4P78363 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
ABCA4P78363 PPIE-208ENST00000470213 927 ntTSL 3 BASIC15.82■□□□□ 0.12
ABCA4P78363 AP003733.1-201ENST00000491725 852 ntBASIC15.82■□□□□ 0.12
ABCA4P78363 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC15.82■□□□□ 0.12
ABCA4P78363 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC15.82■□□□□ 0.12
ABCA4P78363 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA4P78363 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC15.82■□□□□ 0.12
ABCA4P78363 LINC02084-201ENST00000606069 1096 ntBASIC15.82■□□□□ 0.12
ABCA4P78363 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
ABCA4P78363 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC15.82■□□□□ 0.12
ABCA4P78363 CCNC-219ENST00000627680 896 ntTSL 5 BASIC15.82■□□□□ 0.12
ABCA4P78363 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ABCA4P78363 AC243591.1-201ENST00000452967 1364 ntBASIC15.81■□□□□ 0.12
ABCA4P78363 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
ABCA4P78363 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ABCA4P78363 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC15.81■□□□□ 0.12
ABCA4P78363 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
ABCA4P78363 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ABCA4P78363 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ABCA4P78363 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ABCA4P78363 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC15.81■□□□□ 0.12
ABCA4P78363 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC15.81■□□□□ 0.12
ABCA4P78363 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC15.81■□□□□ 0.12
ABCA4P78363 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC15.81■□□□□ 0.12
ABCA4P78363 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC15.81■□□□□ 0.12
ABCA4P78363 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC15.81■□□□□ 0.12
ABCA4P78363 HEIH-201ENST00000623091 1652 ntBASIC15.81■□□□□ 0.12
ABCA4P78363 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ABCA4P78363 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ABCA4P78363 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ABCA4P78363 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ABCA4P78363 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC15.81■□□□□ 0.12
ABCA4P78363 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
ABCA4P78363 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ABCA4P78363 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
ABCA4P78363 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ABCA4P78363 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC15.8■□□□□ 0.12
ABCA4P78363 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC15.8■□□□□ 0.12
ABCA4P78363 TERC-201ENST00000602385 541 ntBASIC15.8■□□□□ 0.12
ABCA4P78363 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
ABCA4P78363 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
ABCA4P78363 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC15.8■□□□□ 0.12
ABCA4P78363 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
ABCA4P78363 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC15.8■□□□□ 0.12
ABCA4P78363 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
ABCA4P78363 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
ABCA4P78363 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC15.8■□□□□ 0.12
ABCA4P78363 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ABCA4P78363 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ABCA4P78363 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ABCA4P78363 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC15.8■□□□□ 0.12
ABCA4P78363 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ABCA4P78363 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms