Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.58■□□□□ 0.41
MSX2P35548 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSX2P35548 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC17.58■□□□□ 0.4
MSX2P35548 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.58■□□□□ 0.4
MSX2P35548 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC17.58■□□□□ 0.4
MSX2P35548 PNMA6B-201ENST00000538162 1200 ntBASIC17.58■□□□□ 0.4
MSX2P35548 RARRES2P6-201ENST00000567333 442 ntBASIC17.58■□□□□ 0.4
MSX2P35548 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC17.58■□□□□ 0.4
MSX2P35548 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSX2P35548 AC073111.5-205ENST00000641717 521 ntBASIC17.58■□□□□ 0.4
MSX2P35548 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSX2P35548 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSX2P35548 AL096828.2-201ENST00000567259 1965 ntBASIC17.58■□□□□ 0.4
MSX2P35548 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.58■□□□□ 0.4
MSX2P35548 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSX2P35548 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
MSX2P35548 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.58■□□□□ 0.4
MSX2P35548 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSX2P35548 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSX2P35548 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
MSX2P35548 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSX2P35548 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
MSX2P35548 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC17.58■□□□□ 0.4
MSX2P35548 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSX2P35548 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSX2P35548 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC17.58■□□□□ 0.4
MSX2P35548 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSX2P35548 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSX2P35548 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX2P35548 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX2P35548 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX2P35548 FLJ13224-201ENST00000313737 1514 ntBASIC17.57■□□□□ 0.4
MSX2P35548 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MSX2P35548 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.57■□□□□ 0.4
MSX2P35548 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX2P35548 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX2P35548 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
MSX2P35548 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC17.57■□□□□ 0.4
MSX2P35548 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX2P35548 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.57■□□□□ 0.4
MSX2P35548 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MSX2P35548 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC17.57■□□□□ 0.4
MSX2P35548 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
MSX2P35548 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX2P35548 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.57■□□□□ 0.4
MSX2P35548 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX2P35548 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX2P35548 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX2P35548 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX2P35548 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX2P35548 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC17.57■□□□□ 0.4
MSX2P35548 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC17.57■□□□□ 0.4
MSX2P35548 KLF2-202ENST00000592003 564 ntTSL 3 BASIC17.57■□□□□ 0.4
MSX2P35548 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
MSX2P35548 AC080038.1-201ENST00000611274 1154 ntBASIC17.57■□□□□ 0.4
MSX2P35548 AC092666.2-201ENST00000613287 246 ntBASIC17.57■□□□□ 0.4
MSX2P35548 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX2P35548 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX2P35548 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX2P35548 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
MSX2P35548 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MSX2P35548 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX2P35548 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.57■□□□□ 0.4
MSX2P35548 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
MSX2P35548 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX2P35548 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.57■□□□□ 0.4
MSX2P35548 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX2P35548 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX2P35548 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MSX2P35548 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX2P35548 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX2P35548 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX2P35548 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC17.57■□□□□ 0.4
MSX2P35548 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.57■□□□□ 0.4
MSX2P35548 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.57■□□□□ 0.4
MSX2P35548 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
MSX2P35548 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
MSX2P35548 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MSX2P35548 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX2P35548 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
MSX2P35548 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSX2P35548 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
MSX2P35548 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSX2P35548 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSX2P35548 AC011676.5-201ENST00000624864 2660 ntBASIC17.56■□□□□ 0.4
MSX2P35548 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSX2P35548 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSX2P35548 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
MSX2P35548 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
MSX2P35548 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSX2P35548 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSX2P35548 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC17.56■□□□□ 0.4
MSX2P35548 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
MSX2P35548 MIR663A-201ENST00000385250 93 ntBASIC17.56■□□□□ 0.4
MSX2P35548 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSX2P35548 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC17.56■□□□□ 0.4
MSX2P35548 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
MSX2P35548 HLA-B-256ENST00000639848 1089 ntBASIC17.56■□□□□ 0.4
MSX2P35548 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSX2P35548 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms