Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHMT2P34897 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.04■□□□□ 0.48
SHMT2P34897 Z98044.1-201ENST00000632503 1764 ntBASIC18.04■□□□□ 0.48
SHMT2P34897 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHMT2P34897 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHMT2P34897 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SHMT2P34897 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SHMT2P34897 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHMT2P34897 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHMT2P34897 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SHMT2P34897 AC022616.7-201ENST00000525383 220 ntBASIC18.04■□□□□ 0.48
SHMT2P34897 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
SHMT2P34897 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC18.04■□□□□ 0.48
SHMT2P34897 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
SHMT2P34897 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
SHMT2P34897 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHMT2P34897 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SHMT2P34897 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SHMT2P34897 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHMT2P34897 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHMT2P34897 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SHMT2P34897 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.04■□□□□ 0.48
SHMT2P34897 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.04■□□□□ 0.48
SHMT2P34897 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHMT2P34897 FZD10-202ENST00000539839 3282 ntBASIC18.04■□□□□ 0.48
SHMT2P34897 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
SHMT2P34897 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SHMT2P34897 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHMT2P34897 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SHMT2P34897 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.03■□□□□ 0.48
SHMT2P34897 AP000997.3-201ENST00000623333 2250 ntBASIC18.03■□□□□ 0.48
SHMT2P34897 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.03■□□□□ 0.48
SHMT2P34897 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.03■□□□□ 0.48
SHMT2P34897 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SHMT2P34897 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHMT2P34897 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHMT2P34897 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHMT2P34897 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.03■□□□□ 0.48
SHMT2P34897 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHMT2P34897 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC18.03■□□□□ 0.48
SHMT2P34897 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18.03■□□□□ 0.48
SHMT2P34897 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.03■□□□□ 0.48
SHMT2P34897 GCSHP2-201ENST00000560971 527 ntBASIC18.03■□□□□ 0.48
SHMT2P34897 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.03■□□□□ 0.48
SHMT2P34897 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC18.03■□□□□ 0.48
SHMT2P34897 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.03■□□□□ 0.48
SHMT2P34897 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.03■□□□□ 0.48
SHMT2P34897 AC024243.1-201ENST00000609234 778 ntBASIC18.03■□□□□ 0.48
SHMT2P34897 AC090164.3-201ENST00000610780 2143 ntBASIC18.03■□□□□ 0.48
SHMT2P34897 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.03■□□□□ 0.48
SHMT2P34897 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
SHMT2P34897 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SHMT2P34897 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHMT2P34897 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
SHMT2P34897 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHMT2P34897 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
SHMT2P34897 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
SHMT2P34897 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHMT2P34897 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.03■□□□□ 0.48
SHMT2P34897 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SHMT2P34897 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHMT2P34897 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.02■□□□□ 0.48
SHMT2P34897 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.02■□□□□ 0.48
SHMT2P34897 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHMT2P34897 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHMT2P34897 WIZP1-201ENST00000531444 2299 ntBASIC18.02■□□□□ 0.48
SHMT2P34897 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHMT2P34897 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHMT2P34897 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.02■□□□□ 0.48
SHMT2P34897 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
SHMT2P34897 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SHMT2P34897 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHMT2P34897 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.02■□□□□ 0.48
SHMT2P34897 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SHMT2P34897 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.02■□□□□ 0.48
SHMT2P34897 AC034232.1-201ENST00000506026 1064 ntBASIC18.02■□□□□ 0.48
SHMT2P34897 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC18.02■□□□□ 0.48
SHMT2P34897 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHMT2P34897 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC18.02■□□□□ 0.48
SHMT2P34897 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHMT2P34897 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.02■□□□□ 0.48
SHMT2P34897 AC010331.1-201ENST00000611423 582 ntBASIC18.02■□□□□ 0.48
SHMT2P34897 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.48
SHMT2P34897 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.02■□□□□ 0.47
SHMT2P34897 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SHMT2P34897 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SHMT2P34897 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
SHMT2P34897 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
SHMT2P34897 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.47
SHMT2P34897 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SHMT2P34897 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHMT2P34897 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHMT2P34897 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHMT2P34897 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.01■□□□□ 0.47
SHMT2P34897 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SHMT2P34897 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.01■□□□□ 0.47
SHMT2P34897 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHMT2P34897 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHMT2P34897 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHMT2P34897 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms