Protein–RNA interactions for Protein: P28288

ABCD3, ATP-binding cassette sub-family D member 3, humanhuman

Predictions only

Length 659 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD3P28288 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC16.95■□□□□ 0.3
ABCD3P28288 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ABCD3P28288 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC16.95■□□□□ 0.3
ABCD3P28288 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC16.95■□□□□ 0.3
ABCD3P28288 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.95■□□□□ 0.3
ABCD3P28288 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.95■□□□□ 0.3
ABCD3P28288 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
ABCD3P28288 USF2-205ENST00000594064 1179 ntTSL 2 BASIC16.95■□□□□ 0.3
ABCD3P28288 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.95■□□□□ 0.3
ABCD3P28288 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
ABCD3P28288 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC16.95■□□□□ 0.3
ABCD3P28288 HYMAI.1-201ENST00000620949 238 ntBASIC16.95■□□□□ 0.3
ABCD3P28288 AC079602.3-201ENST00000623931 403 ntBASIC16.95■□□□□ 0.3
ABCD3P28288 DFFB-212ENST00000625756 649 ntTSL 5 BASIC16.95■□□□□ 0.3
ABCD3P28288 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
ABCD3P28288 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ABCD3P28288 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ABCD3P28288 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
ABCD3P28288 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC16.95■□□□□ 0.3
ABCD3P28288 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ABCD3P28288 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC16.95■□□□□ 0.3
ABCD3P28288 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ABCD3P28288 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ABCD3P28288 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC16.94■□□□□ 0.3
ABCD3P28288 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
ABCD3P28288 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ABCD3P28288 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
ABCD3P28288 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ABCD3P28288 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ABCD3P28288 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC16.94■□□□□ 0.3
ABCD3P28288 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ABCD3P28288 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
ABCD3P28288 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ABCD3P28288 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ABCD3P28288 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
ABCD3P28288 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ABCD3P28288 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
ABCD3P28288 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ABCD3P28288 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC16.94■□□□□ 0.3
ABCD3P28288 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC16.94■□□□□ 0.3
ABCD3P28288 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
ABCD3P28288 AC092597.1-201ENST00000487352 616 ntBASIC16.94■□□□□ 0.3
ABCD3P28288 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC16.94■□□□□ 0.3
ABCD3P28288 KRT18P35-201ENST00000510488 1269 ntBASIC16.94■□□□□ 0.3
ABCD3P28288 REEP1-209ENST00000541910 969 ntTSL 2 BASIC16.94■□□□□ 0.3
ABCD3P28288 AL136038.4-201ENST00000603606 1261 ntBASIC16.94■□□□□ 0.3
ABCD3P28288 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ABCD3P28288 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC16.94■□□□□ 0.3
ABCD3P28288 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC16.94■□□□□ 0.3
ABCD3P28288 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ABCD3P28288 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
ABCD3P28288 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC16.94■□□□□ 0.3
ABCD3P28288 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
ABCD3P28288 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ABCD3P28288 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ABCD3P28288 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ABCD3P28288 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC16.94■□□□□ 0.3
ABCD3P28288 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC16.94■□□□□ 0.3
ABCD3P28288 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC16.94■□□□□ 0.3
ABCD3P28288 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ABCD3P28288 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCD3P28288 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCD3P28288 AC138932.1-201ENST00000534164 6830 ntBASIC16.93■□□□□ 0.3
ABCD3P28288 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCD3P28288 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCD3P28288 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCD3P28288 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC16.93■□□□□ 0.3
ABCD3P28288 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCD3P28288 AL391807.1-203ENST00000604392 2365 ntBASIC16.93■□□□□ 0.3
ABCD3P28288 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCD3P28288 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCD3P28288 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCD3P28288 HBZP1-201ENST00000354915 429 ntBASIC16.93■□□□□ 0.3
ABCD3P28288 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCD3P28288 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC16.93■□□□□ 0.3
ABCD3P28288 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC16.93■□□□□ 0.3
ABCD3P28288 AC087388.1-201ENST00000571370 1112 ntBASIC16.93■□□□□ 0.3
ABCD3P28288 AL445228.2-201ENST00000605589 952 ntBASIC16.93■□□□□ 0.3
ABCD3P28288 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC16.93■□□□□ 0.3
ABCD3P28288 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCD3P28288 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ABCD3P28288 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCD3P28288 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC16.93■□□□□ 0.3
ABCD3P28288 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCD3P28288 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCD3P28288 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ABCD3P28288 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC16.93■□□□□ 0.3
ABCD3P28288 LINC01311-201ENST00000565162 1445 ntBASIC16.93■□□□□ 0.3
ABCD3P28288 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ABCD3P28288 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCD3P28288 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCD3P28288 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
ABCD3P28288 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
ABCD3P28288 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ABCD3P28288 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
ABCD3P28288 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC16.92■□□□□ 0.3
ABCD3P28288 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ABCD3P28288 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ABCD3P28288 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ABCD3P28288 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms