Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 BX088651.1-201ENST00000540551 451 ntBASIC16.29■□□□□ 0.2
SGCEO43556 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC16.29■□□□□ 0.2
SGCEO43556 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SGCEO43556 MIR3180-5-201ENST00000583743 153 ntBASIC16.29■□□□□ 0.2
SGCEO43556 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC16.29■□□□□ 0.2
SGCEO43556 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC16.29■□□□□ 0.2
SGCEO43556 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC16.29■□□□□ 0.2
SGCEO43556 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SGCEO43556 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC16.29■□□□□ 0.2
SGCEO43556 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
SGCEO43556 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.29■□□□□ 0.2
SGCEO43556 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SGCEO43556 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
SGCEO43556 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.29■□□□□ 0.2
SGCEO43556 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SGCEO43556 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC16.29■□□□□ 0.2
SGCEO43556 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SGCEO43556 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SGCEO43556 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SGCEO43556 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SGCEO43556 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SGCEO43556 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SGCEO43556 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
SGCEO43556 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SGCEO43556 AC073592.3-201ENST00000625118 1834 ntBASIC16.29■□□□□ 0.2
SGCEO43556 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SGCEO43556 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC16.28■□□□□ 0.2
SGCEO43556 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SGCEO43556 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SGCEO43556 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
SGCEO43556 AC092338.2-201ENST00000568827 1415 ntBASIC16.28■□□□□ 0.2
SGCEO43556 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SGCEO43556 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC16.28■□□□□ 0.2
SGCEO43556 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SGCEO43556 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SGCEO43556 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SGCEO43556 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SGCEO43556 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SGCEO43556 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SGCEO43556 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
SGCEO43556 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SGCEO43556 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SGCEO43556 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
SGCEO43556 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC16.28■□□□□ 0.2
SGCEO43556 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SGCEO43556 MMP23A-201ENST00000234610 1017 ntBASIC16.28■□□□□ 0.2
SGCEO43556 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SGCEO43556 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC16.28■□□□□ 0.2
SGCEO43556 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC16.28■□□□□ 0.2
SGCEO43556 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC16.28■□□□□ 0.2
SGCEO43556 MIR4674-201ENST00000582457 87 ntBASIC16.28■□□□□ 0.2
SGCEO43556 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC16.28■□□□□ 0.2
SGCEO43556 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC16.28■□□□□ 0.2
SGCEO43556 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SGCEO43556 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC16.28■□□□□ 0.2
SGCEO43556 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
SGCEO43556 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SGCEO43556 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC16.28■□□□□ 0.2
SGCEO43556 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
SGCEO43556 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC16.28■□□□□ 0.2
SGCEO43556 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SGCEO43556 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
SGCEO43556 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SGCEO43556 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SGCEO43556 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC16.28■□□□□ 0.2
SGCEO43556 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.28■□□□□ 0.2
SGCEO43556 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SGCEO43556 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
SGCEO43556 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC16.28■□□□□ 0.2
SGCEO43556 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SGCEO43556 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SGCEO43556 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.28■□□□□ 0.2
SGCEO43556 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
SGCEO43556 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SGCEO43556 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SGCEO43556 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
SGCEO43556 AC034236.2-201ENST00000606662 1610 ntBASIC16.27■□□□□ 0.2
SGCEO43556 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
SGCEO43556 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SGCEO43556 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC16.27■□□□□ 0.2
SGCEO43556 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
SGCEO43556 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SGCEO43556 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SGCEO43556 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
SGCEO43556 TSPY14P-201ENST00000303979 915 ntBASIC16.27■□□□□ 0.2
SGCEO43556 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC16.27■□□□□ 0.2
SGCEO43556 ELP6-205ENST00000439305 880 ntTSL 2 BASIC16.27■□□□□ 0.2
SGCEO43556 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC16.27■□□□□ 0.2
SGCEO43556 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SGCEO43556 EGLN1P1-201ENST00000531623 762 ntBASIC16.27■□□□□ 0.2
SGCEO43556 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SGCEO43556 NAPSB-206ENST00000562112 1266 ntBASIC16.27■□□□□ 0.2
SGCEO43556 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC16.27■□□□□ 0.2
SGCEO43556 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SGCEO43556 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
SGCEO43556 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC16.27■□□□□ 0.2
SGCEO43556 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
SGCEO43556 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SGCEO43556 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
SGCEO43556 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms