Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A5A8TX70 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A5A8TX70 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A5A8TX70 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A5A8TX70 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A5A8TX70 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A5A8TX70 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC14.22□□□□□ -0.13
COL6A5A8TX70 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
COL6A5A8TX70 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A5A8TX70 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC14.22□□□□□ -0.13
COL6A5A8TX70 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC14.22□□□□□ -0.13
COL6A5A8TX70 AC051619.7-201ENST00000568314 623 ntBASIC14.22□□□□□ -0.13
COL6A5A8TX70 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A5A8TX70 AC008761.3-201ENST00000624803 892 ntBASIC14.22□□□□□ -0.13
COL6A5A8TX70 LINC00628-201ENST00000628516 1289 ntBASIC14.22□□□□□ -0.13
COL6A5A8TX70 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A5A8TX70 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A5A8TX70 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A5A8TX70 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC14.21□□□□□ -0.13
COL6A5A8TX70 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC14.21□□□□□ -0.13
COL6A5A8TX70 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A5A8TX70 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A5A8TX70 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A5A8TX70 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A5A8TX70 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A5A8TX70 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC14.21□□□□□ -0.13
COL6A5A8TX70 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC14.21□□□□□ -0.13
COL6A5A8TX70 FAM207CP-201ENST00000443486 507 ntBASIC14.21□□□□□ -0.13
COL6A5A8TX70 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC14.21□□□□□ -0.13
COL6A5A8TX70 AC113404.2-201ENST00000507884 177 ntBASIC14.21□□□□□ -0.13
COL6A5A8TX70 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A5A8TX70 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC14.21□□□□□ -0.13
COL6A5A8TX70 SDCCAG3P1-201ENST00000589292 1150 ntBASIC14.21□□□□□ -0.13
COL6A5A8TX70 AC022145.2-201ENST00000598203 171 ntBASIC14.21□□□□□ -0.13
COL6A5A8TX70 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A5A8TX70 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A5A8TX70 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A5A8TX70 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC14.21□□□□□ -0.13
COL6A5A8TX70 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC14.21□□□□□ -0.14
COL6A5A8TX70 SOD2-201ENST00000337404 991 ntTSL 2 BASIC14.21□□□□□ -0.14
COL6A5A8TX70 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
COL6A5A8TX70 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
COL6A5A8TX70 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
COL6A5A8TX70 SLBP-205ENST00000488267 987 ntTSL 2 BASIC14.21□□□□□ -0.14
COL6A5A8TX70 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.21□□□□□ -0.14
COL6A5A8TX70 AC093520.2-201ENST00000561830 333 ntBASIC14.21□□□□□ -0.14
COL6A5A8TX70 AC004835.2-201ENST00000603762 682 ntBASIC14.21□□□□□ -0.14
COL6A5A8TX70 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC14.21□□□□□ -0.14
COL6A5A8TX70 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
COL6A5A8TX70 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
COL6A5A8TX70 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
COL6A5A8TX70 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC14.21□□□□□ -0.14
COL6A5A8TX70 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
COL6A5A8TX70 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
COL6A5A8TX70 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
COL6A5A8TX70 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.14
COL6A5A8TX70 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC14.2□□□□□ -0.14
COL6A5A8TX70 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A5A8TX70 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A5A8TX70 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A5A8TX70 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A5A8TX70 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A5A8TX70 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC14.2□□□□□ -0.14
COL6A5A8TX70 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC14.2□□□□□ -0.14
COL6A5A8TX70 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC14.2□□□□□ -0.14
COL6A5A8TX70 TK1-204ENST00000590430 683 ntTSL 3 BASIC14.2□□□□□ -0.14
COL6A5A8TX70 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A5A8TX70 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
COL6A5A8TX70 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A5A8TX70 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A5A8TX70 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A5A8TX70 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A5A8TX70 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC14.2□□□□□ -0.14
COL6A5A8TX70 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A5A8TX70 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC14.2□□□□□ -0.14
COL6A5A8TX70 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A5A8TX70 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A5A8TX70 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
COL6A5A8TX70 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC14.2□□□□□ -0.14
COL6A5A8TX70 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A5A8TX70 AC023141.5-201ENST00000458585 616 ntBASIC14.2□□□□□ -0.14
COL6A5A8TX70 NAT14-202ENST00000587400 416 ntTSL 5 BASIC14.2□□□□□ -0.14
COL6A5A8TX70 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC14.2□□□□□ -0.14
COL6A5A8TX70 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC14.2□□□□□ -0.14
COL6A5A8TX70 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A5A8TX70 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A5A8TX70 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC14.2□□□□□ -0.14
COL6A5A8TX70 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A5A8TX70 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A5A8TX70 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A5A8TX70 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC14.19□□□□□ -0.14
COL6A5A8TX70 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A5A8TX70 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
COL6A5A8TX70 RCC2P3-201ENST00000418112 1537 ntBASIC14.19□□□□□ -0.14
COL6A5A8TX70 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC14.19□□□□□ -0.14
COL6A5A8TX70 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A5A8TX70 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A5A8TX70 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC14.19□□□□□ -0.14
COL6A5A8TX70 DUX4L27-201ENST00000554796 1261 ntBASIC14.19□□□□□ -0.14
COL6A5A8TX70 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms