Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC28.6■■■□□ 2.17
DDX41Q9UJV9 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
DDX41Q9UJV9 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC28.59■■■□□ 2.17
DDX41Q9UJV9 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC28.59■■■□□ 2.17
DDX41Q9UJV9 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC28.58■■■□□ 2.17
DDX41Q9UJV9 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC28.58■■■□□ 2.17
DDX41Q9UJV9 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
DDX41Q9UJV9 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
DDX41Q9UJV9 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC28.57■■■□□ 2.16
DDX41Q9UJV9 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC28.55■■■□□ 2.16
DDX41Q9UJV9 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC28.55■■■□□ 2.16
DDX41Q9UJV9 AL139393.2-201ENST00000608721 2025 ntBASIC28.55■■■□□ 2.16
DDX41Q9UJV9 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC28.54■■■□□ 2.16
DDX41Q9UJV9 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
DDX41Q9UJV9 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC28.54■■■□□ 2.16
DDX41Q9UJV9 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC28.54■■■□□ 2.16
DDX41Q9UJV9 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
DDX41Q9UJV9 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
DDX41Q9UJV9 MED25-210ENST00000612854 801 ntTSL 5 BASIC28.53■■■□□ 2.16
DDX41Q9UJV9 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
DDX41Q9UJV9 MED25-214ENST00000622402 642 ntTSL 5 BASIC28.53■■■□□ 2.16
DDX41Q9UJV9 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
DDX41Q9UJV9 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
DDX41Q9UJV9 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC28.51■■■□□ 2.15
DDX41Q9UJV9 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC28.51■■■□□ 2.15
DDX41Q9UJV9 AC092296.2-201ENST00000589470 999 ntBASIC28.51■■■□□ 2.15
DDX41Q9UJV9 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
DDX41Q9UJV9 AC142086.6-201ENST00000621154 1765 ntBASIC28.51■■■□□ 2.15
DDX41Q9UJV9 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
DDX41Q9UJV9 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
DDX41Q9UJV9 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC28.5■■■□□ 2.15
DDX41Q9UJV9 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC28.5■■■□□ 2.15
DDX41Q9UJV9 NTF6A-201ENST00000591175 560 ntBASIC28.49■■■□□ 2.15
DDX41Q9UJV9 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
DDX41Q9UJV9 SHF-207ENST00000560540 2062 ntTSL 5 BASIC28.49■■■□□ 2.15
DDX41Q9UJV9 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC28.48■■■□□ 2.15
DDX41Q9UJV9 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
DDX41Q9UJV9 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC28.48■■■□□ 2.15
DDX41Q9UJV9 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
DDX41Q9UJV9 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC28.48■■■□□ 2.15
DDX41Q9UJV9 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
DDX41Q9UJV9 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC28.47■■■□□ 2.15
DDX41Q9UJV9 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC28.47■■■□□ 2.15
DDX41Q9UJV9 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
DDX41Q9UJV9 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
DDX41Q9UJV9 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
DDX41Q9UJV9 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
DDX41Q9UJV9 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
DDX41Q9UJV9 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
DDX41Q9UJV9 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC28.46■■■□□ 2.15
DDX41Q9UJV9 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
DDX41Q9UJV9 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC28.46■■■□□ 2.15
DDX41Q9UJV9 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC28.46■■■□□ 2.15
DDX41Q9UJV9 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
DDX41Q9UJV9 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC28.45■■■□□ 2.15
DDX41Q9UJV9 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
DDX41Q9UJV9 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC28.45■■■□□ 2.14
DDX41Q9UJV9 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC28.45■■■□□ 2.14
DDX41Q9UJV9 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC28.45■■■□□ 2.14
DDX41Q9UJV9 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC28.45■■■□□ 2.14
DDX41Q9UJV9 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC28.44■■■□□ 2.14
DDX41Q9UJV9 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC28.44■■■□□ 2.14
DDX41Q9UJV9 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC28.44■■■□□ 2.14
DDX41Q9UJV9 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC28.43■■■□□ 2.14
DDX41Q9UJV9 AC126177.7-201ENST00000547904 679 ntBASIC28.43■■■□□ 2.14
DDX41Q9UJV9 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
DDX41Q9UJV9 ECEL1P2-201ENST00000461596 1295 ntBASIC28.42■■■□□ 2.14
DDX41Q9UJV9 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC28.42■■■□□ 2.14
DDX41Q9UJV9 CREM-210ENST00000374721 2020 ntTSL 5 BASIC28.41■■■□□ 2.14
DDX41Q9UJV9 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
DDX41Q9UJV9 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC28.4■■■□□ 2.14
DDX41Q9UJV9 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
DDX41Q9UJV9 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC28.4■■■□□ 2.14
DDX41Q9UJV9 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
DDX41Q9UJV9 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC28.4■■■□□ 2.14
DDX41Q9UJV9 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
DDX41Q9UJV9 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
DDX41Q9UJV9 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC28.39■■■□□ 2.14
DDX41Q9UJV9 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC28.39■■■□□ 2.14
DDX41Q9UJV9 U85056.1-201ENST00000616429 682 ntBASIC28.39■■■□□ 2.14
DDX41Q9UJV9 HYI-213ENST00000583037 1322 ntTSL 5 BASIC28.39■■■□□ 2.13
DDX41Q9UJV9 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
DDX41Q9UJV9 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
DDX41Q9UJV9 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
DDX41Q9UJV9 MOB2-207ENST00000614710 705 ntTSL 5 BASIC28.38■■■□□ 2.13
DDX41Q9UJV9 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
DDX41Q9UJV9 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC28.37■■■□□ 2.13
DDX41Q9UJV9 AL157400.5-201ENST00000507624 621 ntBASIC28.37■■■□□ 2.13
DDX41Q9UJV9 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC28.37■■■□□ 2.13
DDX41Q9UJV9 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC28.37■■■□□ 2.13
DDX41Q9UJV9 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
DDX41Q9UJV9 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC28.37■■■□□ 2.13
DDX41Q9UJV9 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
DDX41Q9UJV9 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
DDX41Q9UJV9 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC28.36■■■□□ 2.13
DDX41Q9UJV9 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
DDX41Q9UJV9 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
DDX41Q9UJV9 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
DDX41Q9UJV9 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
DDX41Q9UJV9 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms