Protein–RNA interactions for Protein: Q5SRH9

TTC39A, Tetratricopeptide repeat protein 39A, humanhuman

Predictions only

Length 613 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC39AQ5SRH9 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
TTC39AQ5SRH9 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC30.59■■■□□ 2.49
TTC39AQ5SRH9 AC060814.1-201ENST00000554326 538 ntBASIC30.59■■■□□ 2.49
TTC39AQ5SRH9 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
TTC39AQ5SRH9 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
TTC39AQ5SRH9 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC30.58■■■□□ 2.49
TTC39AQ5SRH9 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC30.58■■■□□ 2.49
TTC39AQ5SRH9 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
TTC39AQ5SRH9 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC30.57■■■□□ 2.48
TTC39AQ5SRH9 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC30.57■■■□□ 2.48
TTC39AQ5SRH9 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC30.57■■■□□ 2.48
TTC39AQ5SRH9 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC30.56■■■□□ 2.48
TTC39AQ5SRH9 SHF-206ENST00000560471 2499 ntTSL 5 BASIC30.55■■■□□ 2.48
TTC39AQ5SRH9 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
TTC39AQ5SRH9 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC30.55■■■□□ 2.48
TTC39AQ5SRH9 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC30.55■■■□□ 2.48
TTC39AQ5SRH9 AC126177.7-201ENST00000547904 679 ntBASIC30.55■■■□□ 2.48
TTC39AQ5SRH9 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
TTC39AQ5SRH9 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
TTC39AQ5SRH9 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC30.55■■■□□ 2.48
TTC39AQ5SRH9 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC30.54■■■□□ 2.48
TTC39AQ5SRH9 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
TTC39AQ5SRH9 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC30.53■■■□□ 2.48
TTC39AQ5SRH9 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
TTC39AQ5SRH9 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC30.52■■■□□ 2.48
TTC39AQ5SRH9 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC30.52■■■□□ 2.48
TTC39AQ5SRH9 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
TTC39AQ5SRH9 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
TTC39AQ5SRH9 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
TTC39AQ5SRH9 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
TTC39AQ5SRH9 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC30.51■■■□□ 2.47
TTC39AQ5SRH9 RNF126P1-201ENST00000567452 1320 ntBASIC30.5■■■□□ 2.47
TTC39AQ5SRH9 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC30.5■■■□□ 2.47
TTC39AQ5SRH9 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC30.5■■■□□ 2.47
TTC39AQ5SRH9 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
TTC39AQ5SRH9 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
TTC39AQ5SRH9 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
TTC39AQ5SRH9 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC30.49■■■□□ 2.47
TTC39AQ5SRH9 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
TTC39AQ5SRH9 RARRES2P2-201ENST00000394842 485 ntBASIC30.48■■■□□ 2.47
TTC39AQ5SRH9 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC30.48■■■□□ 2.47
TTC39AQ5SRH9 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC30.48■■■□□ 2.47
TTC39AQ5SRH9 AL359258.2-201ENST00000564063 1566 ntBASIC30.48■■■□□ 2.47
TTC39AQ5SRH9 HES4-202ENST00000428771 1040 ntTSL 2 BASIC30.47■■■□□ 2.47
TTC39AQ5SRH9 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
TTC39AQ5SRH9 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC30.46■■■□□ 2.47
TTC39AQ5SRH9 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
TTC39AQ5SRH9 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC30.45■■■□□ 2.47
TTC39AQ5SRH9 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
TTC39AQ5SRH9 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
TTC39AQ5SRH9 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
TTC39AQ5SRH9 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
TTC39AQ5SRH9 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC30.43■■■□□ 2.46
TTC39AQ5SRH9 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
TTC39AQ5SRH9 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC30.43■■■□□ 2.46
TTC39AQ5SRH9 AC092296.2-201ENST00000589470 999 ntBASIC30.42■■■□□ 2.46
TTC39AQ5SRH9 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC30.42■■■□□ 2.46
TTC39AQ5SRH9 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
TTC39AQ5SRH9 LINC01003-201ENST00000564834 1764 ntBASIC30.41■■■□□ 2.46
TTC39AQ5SRH9 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
TTC39AQ5SRH9 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
TTC39AQ5SRH9 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC30.41■■■□□ 2.46
TTC39AQ5SRH9 AC142086.6-201ENST00000621154 1765 ntBASIC30.41■■■□□ 2.46
TTC39AQ5SRH9 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC30.4■■■□□ 2.46
TTC39AQ5SRH9 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC30.4■■■□□ 2.46
TTC39AQ5SRH9 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
TTC39AQ5SRH9 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
TTC39AQ5SRH9 AL157400.5-201ENST00000507624 621 ntBASIC30.39■■■□□ 2.46
TTC39AQ5SRH9 MOB2-207ENST00000614710 705 ntTSL 5 BASIC30.39■■■□□ 2.46
TTC39AQ5SRH9 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC30.38■■■□□ 2.45
TTC39AQ5SRH9 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC30.38■■■□□ 2.45
TTC39AQ5SRH9 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
TTC39AQ5SRH9 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC30.37■■■□□ 2.45
TTC39AQ5SRH9 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
TTC39AQ5SRH9 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC30.37■■■□□ 2.45
TTC39AQ5SRH9 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
TTC39AQ5SRH9 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC30.36■■■□□ 2.45
TTC39AQ5SRH9 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
TTC39AQ5SRH9 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC30.34■■■□□ 2.45
TTC39AQ5SRH9 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC30.34■■■□□ 2.45
TTC39AQ5SRH9 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC30.33■■■□□ 2.45
TTC39AQ5SRH9 WHAMMP3-201ENST00000611636 1609 ntBASIC30.33■■■□□ 2.45
TTC39AQ5SRH9 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC30.33■■■□□ 2.45
TTC39AQ5SRH9 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC30.33■■■□□ 2.45
TTC39AQ5SRH9 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
TTC39AQ5SRH9 ECEL1P2-201ENST00000461596 1295 ntBASIC30.33■■■□□ 2.45
TTC39AQ5SRH9 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
TTC39AQ5SRH9 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
TTC39AQ5SRH9 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
TTC39AQ5SRH9 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC30.32■■■□□ 2.44
TTC39AQ5SRH9 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC30.32■■■□□ 2.44
TTC39AQ5SRH9 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
TTC39AQ5SRH9 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
TTC39AQ5SRH9 BX255925.1-201ENST00000566954 1854 ntBASIC30.31■■■□□ 2.44
TTC39AQ5SRH9 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC30.31■■■□□ 2.44
TTC39AQ5SRH9 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC30.31■■■□□ 2.44
TTC39AQ5SRH9 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC30.31■■■□□ 2.44
TTC39AQ5SRH9 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC30.31■■■□□ 2.44
TTC39AQ5SRH9 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC30.3■■■□□ 2.44
TTC39AQ5SRH9 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 135.7 ms