Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
CDH4P55283 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC25.71■■□□□ 1.71
CDH4P55283 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
CDH4P55283 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC25.7■■□□□ 1.71
CDH4P55283 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
CDH4P55283 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC25.7■■□□□ 1.7
CDH4P55283 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC25.7■■□□□ 1.7
CDH4P55283 CEP120-209ENST00000515110 606 ntTSL 3 BASIC25.69■■□□□ 1.7
CDH4P55283 HSD17B1P1-201ENST00000590052 955 ntBASIC25.69■■□□□ 1.7
CDH4P55283 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC25.69■■□□□ 1.7
CDH4P55283 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC25.68■■□□□ 1.7
CDH4P55283 GPX1-201ENST00000419349 1106 ntBASIC25.68■■□□□ 1.7
CDH4P55283 AC126177.7-201ENST00000547904 679 ntBASIC25.68■■□□□ 1.7
CDH4P55283 AC022413.1-201ENST00000624602 984 ntBASIC25.68■■□□□ 1.7
CDH4P55283 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CDH4P55283 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC25.67■■□□□ 1.7
CDH4P55283 LINC01003-201ENST00000564834 1764 ntBASIC25.67■■□□□ 1.7
CDH4P55283 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC25.67■■□□□ 1.7
CDH4P55283 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC25.67■■□□□ 1.7
CDH4P55283 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
CDH4P55283 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC25.67■■□□□ 1.7
CDH4P55283 MED25-210ENST00000612854 801 ntTSL 5 BASIC25.67■■□□□ 1.7
CDH4P55283 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
CDH4P55283 MED25-214ENST00000622402 642 ntTSL 5 BASIC25.67■■□□□ 1.7
CDH4P55283 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CDH4P55283 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
CDH4P55283 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC25.66■■□□□ 1.7
CDH4P55283 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CDH4P55283 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC25.66■■□□□ 1.7
CDH4P55283 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CDH4P55283 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CDH4P55283 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CDH4P55283 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC25.65■■□□□ 1.7
CDH4P55283 AC060814.1-201ENST00000554326 538 ntBASIC25.65■■□□□ 1.7
CDH4P55283 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC25.65■■□□□ 1.7
CDH4P55283 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
CDH4P55283 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC25.64■■□□□ 1.7
CDH4P55283 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
CDH4P55283 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC25.64■■□□□ 1.7
CDH4P55283 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC25.64■■□□□ 1.69
CDH4P55283 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC25.64■■□□□ 1.69
CDH4P55283 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
CDH4P55283 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC25.63■■□□□ 1.69
CDH4P55283 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC25.63■■□□□ 1.69
CDH4P55283 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
CDH4P55283 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CDH4P55283 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CDH4P55283 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
CDH4P55283 BX255925.1-201ENST00000566954 1854 ntBASIC25.61■■□□□ 1.69
CDH4P55283 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
CDH4P55283 AL359258.2-201ENST00000564063 1566 ntBASIC25.61■■□□□ 1.69
CDH4P55283 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
CDH4P55283 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC25.6■■□□□ 1.69
CDH4P55283 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC25.6■■□□□ 1.69
CDH4P55283 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CDH4P55283 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CDH4P55283 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC25.6■■□□□ 1.69
CDH4P55283 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CDH4P55283 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC25.59■■□□□ 1.69
CDH4P55283 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC25.59■■□□□ 1.69
CDH4P55283 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC25.59■■□□□ 1.69
CDH4P55283 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
CDH4P55283 HES4-202ENST00000428771 1040 ntTSL 2 BASIC25.58■■□□□ 1.69
CDH4P55283 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
CDH4P55283 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC25.58■■□□□ 1.69
CDH4P55283 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC25.58■■□□□ 1.69
CDH4P55283 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
CDH4P55283 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
CDH4P55283 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
CDH4P55283 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
CDH4P55283 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
CDH4P55283 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
CDH4P55283 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
CDH4P55283 RNF126P1-201ENST00000567452 1320 ntBASIC25.55■■□□□ 1.68
CDH4P55283 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
CDH4P55283 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC25.54■■□□□ 1.68
CDH4P55283 WHAMMP3-201ENST00000611636 1609 ntBASIC25.54■■□□□ 1.68
CDH4P55283 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC25.54■■□□□ 1.68
CDH4P55283 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC25.54■■□□□ 1.68
CDH4P55283 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC25.53■■□□□ 1.68
CDH4P55283 AC092296.2-201ENST00000589470 999 ntBASIC25.53■■□□□ 1.68
CDH4P55283 BRD4-212ENST00000630599 726 ntTSL 2 BASIC25.53■■□□□ 1.68
CDH4P55283 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
CDH4P55283 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC25.52■■□□□ 1.68
CDH4P55283 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC25.52■■□□□ 1.68
CDH4P55283 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
CDH4P55283 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC25.51■■□□□ 1.67
CDH4P55283 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
CDH4P55283 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC25.51■■□□□ 1.67
CDH4P55283 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
CDH4P55283 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
CDH4P55283 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC25.49■■□□□ 1.67
CDH4P55283 AL157400.5-201ENST00000507624 621 ntBASIC25.49■■□□□ 1.67
CDH4P55283 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC25.48■■□□□ 1.67
CDH4P55283 RARRES2P2-201ENST00000394842 485 ntBASIC25.48■■□□□ 1.67
CDH4P55283 ECEL1P2-201ENST00000461596 1295 ntBASIC25.48■■□□□ 1.67
CDH4P55283 MOB2-207ENST00000614710 705 ntTSL 5 BASIC25.48■■□□□ 1.67
CDH4P55283 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
CDH4P55283 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
CDH4P55283 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC25.48■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms