Protein–RNA interactions for Protein: O54990

Prom1, Prominin-1, mousemouse

Predictions only

Length 867 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prom1O54990 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Prom1O54990 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Prom1O54990 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Prom1O54990 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC25.55■■□□□ 1.68
Prom1O54990 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC25.54■■□□□ 1.68
Prom1O54990 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
Prom1O54990 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Prom1O54990 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Prom1O54990 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
Prom1O54990 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC25.52■■□□□ 1.68
Prom1O54990 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
Prom1O54990 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
Prom1O54990 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
Prom1O54990 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Prom1O54990 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
Prom1O54990 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC25.5■■□□□ 1.67
Prom1O54990 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC25.5■■□□□ 1.67
Prom1O54990 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC25.5■■□□□ 1.67
Prom1O54990 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Prom1O54990 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Prom1O54990 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
Prom1O54990 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC25.49■■□□□ 1.67
Prom1O54990 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC25.49■■□□□ 1.67
Prom1O54990 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Prom1O54990 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Prom1O54990 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Prom1O54990 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC25.48■■□□□ 1.67
Prom1O54990 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
Prom1O54990 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Prom1O54990 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC25.47■■□□□ 1.67
Prom1O54990 Gm5921-201ENSMUST00000075898 882 ntBASIC25.47■■□□□ 1.67
Prom1O54990 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC25.46■■□□□ 1.67
Prom1O54990 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
Prom1O54990 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
Prom1O54990 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC25.45■■□□□ 1.67
Prom1O54990 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
Prom1O54990 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC25.45■■□□□ 1.66
Prom1O54990 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC25.45■■□□□ 1.66
Prom1O54990 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.66
Prom1O54990 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC25.44■■□□□ 1.66
Prom1O54990 Gm5812-201ENSMUST00000061073 957 ntBASIC25.44■■□□□ 1.66
Prom1O54990 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
Prom1O54990 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC25.42■■□□□ 1.66
Prom1O54990 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Prom1O54990 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC25.42■■□□□ 1.66
Prom1O54990 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC25.41■■□□□ 1.66
Prom1O54990 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
Prom1O54990 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Prom1O54990 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
Prom1O54990 Gm44428-201ENSMUST00000204474 874 ntBASIC25.41■■□□□ 1.66
Prom1O54990 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC25.41■■□□□ 1.66
Prom1O54990 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC25.41■■□□□ 1.66
Prom1O54990 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Prom1O54990 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Prom1O54990 Gm4419-202ENSMUST00000226239 1431 ntBASIC25.39■■□□□ 1.66
Prom1O54990 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
Prom1O54990 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC25.39■■□□□ 1.66
Prom1O54990 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
Prom1O54990 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC25.39■■□□□ 1.65
Prom1O54990 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC25.38■■□□□ 1.65
Prom1O54990 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Prom1O54990 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Prom1O54990 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC25.37■■□□□ 1.65
Prom1O54990 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC25.37■■□□□ 1.65
Prom1O54990 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Prom1O54990 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC25.36■■□□□ 1.65
Prom1O54990 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC25.36■■□□□ 1.65
Prom1O54990 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
Prom1O54990 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Prom1O54990 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Prom1O54990 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Prom1O54990 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Prom1O54990 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC25.35■■□□□ 1.65
Prom1O54990 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Prom1O54990 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
Prom1O54990 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC25.34■■□□□ 1.65
Prom1O54990 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Prom1O54990 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Prom1O54990 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.64
Prom1O54990 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC25.32■■□□□ 1.64
Prom1O54990 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
Prom1O54990 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
Prom1O54990 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
Prom1O54990 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC25.32■■□□□ 1.64
Prom1O54990 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Prom1O54990 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Prom1O54990 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Prom1O54990 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC25.3■■□□□ 1.64
Prom1O54990 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC25.3■■□□□ 1.64
Prom1O54990 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC25.3■■□□□ 1.64
Prom1O54990 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
Prom1O54990 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Prom1O54990 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
Prom1O54990 Gm13238-201ENSMUST00000117655 780 ntBASIC25.29■■□□□ 1.64
Prom1O54990 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Prom1O54990 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
Prom1O54990 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC25.28■■□□□ 1.64
Prom1O54990 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Prom1O54990 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC25.27■■□□□ 1.64
Prom1O54990 Gm22567-201ENSMUST00000175542 342 ntBASIC25.27■■□□□ 1.64
Retrieved 100 of 76,532 protein–RNA pairs in 204.4 ms