Protein–RNA interactions for Protein: O54990

Prom1, Prominin-1, mousemouse

Predictions only

Length 867 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prom1O54990 Gm25239-201ENSMUST00000174915 86 ntBASIC43.81■■■■■ 4.6
Prom1O54990 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC40.62■■■■■ 4.09
Prom1O54990 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC39.91■■■■□ 3.98
Prom1O54990 Gm24109-201ENSMUST00000175489 103 ntBASIC38.09■■■■□ 3.69
Prom1O54990 Gm15042-201ENSMUST00000120212 883 ntBASIC38.06■■■■□ 3.68
Prom1O54990 Gm15045-201ENSMUST00000117359 883 ntBASIC37.26■■■■□ 3.56
Prom1O54990 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC36.96■■■■□ 3.51
Prom1O54990 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC36.93■■■■□ 3.5
Prom1O54990 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC36.88■■■■□ 3.49
Prom1O54990 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC36.63■■■■□ 3.45
Prom1O54990 Gm23366-201ENSMUST00000175022 89 ntBASIC36.47■■■■□ 3.43
Prom1O54990 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC36.47■■■■□ 3.43
Prom1O54990 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC36.25■■■■□ 3.39
Prom1O54990 AC153911.1-202ENSMUST00000218534 1034 ntBASIC35.61■■■■□ 3.29
Prom1O54990 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC35.6■■■■□ 3.29
Prom1O54990 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC35.52■■■■□ 3.28
Prom1O54990 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC35.38■■■■□ 3.25
Prom1O54990 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC35.16■■■■□ 3.22
Prom1O54990 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC35.13■■■■□ 3.21
Prom1O54990 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC35.05■■■■□ 3.2
Prom1O54990 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
Prom1O54990 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC34.98■■■■□ 3.19
Prom1O54990 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC34.91■■■■□ 3.18
Prom1O54990 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC34.83■■■■□ 3.17
Prom1O54990 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC34.8■■■■□ 3.16
Prom1O54990 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC34.72■■■■□ 3.15
Prom1O54990 Gm25238-201ENSMUST00000174914 89 ntBASIC34.68■■■■□ 3.14
Prom1O54990 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
Prom1O54990 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC34.57■■■■□ 3.12
Prom1O54990 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC34.54■■■■□ 3.12
Prom1O54990 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC34.5■■■■□ 3.11
Prom1O54990 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC34.49■■■■□ 3.11
Prom1O54990 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC34.18■■■■□ 3.06
Prom1O54990 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC34.09■■■■□ 3.05
Prom1O54990 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC34.08■■■■□ 3.05
Prom1O54990 Psd-208ENSMUST00000224556 2034 ntBASIC33.84■■■■□ 3.01
Prom1O54990 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC33.83■■■■□ 3.01
Prom1O54990 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC33.81■■■■□ 3
Prom1O54990 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC33.69■■■□□ 2.98
Prom1O54990 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC33.61■■■□□ 2.97
Prom1O54990 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC33.56■■■□□ 2.96
Prom1O54990 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC33.45■■■□□ 2.95
Prom1O54990 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC33.41■■■□□ 2.94
Prom1O54990 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC33.36■■■□□ 2.93
Prom1O54990 Gm27325-201ENSMUST00000175467 74 ntBASIC33.32■■■□□ 2.92
Prom1O54990 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC33.28■■■□□ 2.92
Prom1O54990 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC33.24■■■□□ 2.91
Prom1O54990 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC33.19■■■□□ 2.9
Prom1O54990 Gm25262-201ENSMUST00000174934 133 ntBASIC33.17■■■□□ 2.9
Prom1O54990 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC32.97■■■□□ 2.87
Prom1O54990 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
Prom1O54990 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
Prom1O54990 Rab21-202ENSMUST00000218831 843 ntBASIC32.79■■■□□ 2.84
Prom1O54990 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC32.78■■■□□ 2.84
Prom1O54990 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC32.77■■■□□ 2.84
Prom1O54990 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
Prom1O54990 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC32.75■■■□□ 2.83
Prom1O54990 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC32.74■■■□□ 2.83
Prom1O54990 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC32.71■■■□□ 2.83
Prom1O54990 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC32.7■■■□□ 2.82
Prom1O54990 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
Prom1O54990 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC32.6■■■□□ 2.81
Prom1O54990 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC32.58■■■□□ 2.81
Prom1O54990 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC32.56■■■□□ 2.8
Prom1O54990 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
Prom1O54990 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC32.5■■■□□ 2.79
Prom1O54990 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC32.48■■■□□ 2.79
Prom1O54990 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
Prom1O54990 Gm26115-201ENSMUST00000175605 87 ntBASIC32.41■■■□□ 2.78
Prom1O54990 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
Prom1O54990 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC32.36■■■□□ 2.77
Prom1O54990 Gm8109-201ENSMUST00000194076 746 ntBASIC32.34■■■□□ 2.77
Prom1O54990 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC32.3■■■□□ 2.76
Prom1O54990 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC32.28■■■□□ 2.76
Prom1O54990 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
Prom1O54990 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
Prom1O54990 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
Prom1O54990 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
Prom1O54990 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC32.17■■■□□ 2.74
Prom1O54990 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC32.17■■■□□ 2.74
Prom1O54990 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
Prom1O54990 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC32.12■■■□□ 2.73
Prom1O54990 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC32.06■■■□□ 2.72
Prom1O54990 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC32.05■■■□□ 2.72
Prom1O54990 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
Prom1O54990 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC32■■■□□ 2.71
Prom1O54990 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC31.95■■■□□ 2.71
Prom1O54990 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC31.94■■■□□ 2.7
Prom1O54990 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC31.89■■■□□ 2.7
Prom1O54990 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
Prom1O54990 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
Prom1O54990 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Prom1O54990 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC31.76■■■□□ 2.68
Prom1O54990 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC31.74■■■□□ 2.67
Prom1O54990 Gm10524-201ENSMUST00000181931 1893 ntBASIC31.72■■■□□ 2.67
Prom1O54990 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
Prom1O54990 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
Prom1O54990 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC31.7■■■□□ 2.67
Prom1O54990 Gm17082-201ENSMUST00000166043 1091 ntBASIC31.7■■■□□ 2.67
Prom1O54990 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC31.67■■■□□ 2.66
Retrieved 100 of 76,532 protein–RNA pairs in 14.4 ms