Protein–RNA interactions for Protein: O54990

Prom1, Prominin-1, mousemouse

Predictions only

Length 867 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prom1O54990 Gm25239-201ENSMUST00000174915 86 ntBASIC43,81■■■■■ 4,6
Prom1O54990 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC40,62■■■■■ 4,09
Prom1O54990 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC39,91■■■■□ 3,98
Prom1O54990 Gm24109-201ENSMUST00000175489 103 ntBASIC38,09■■■■□ 3,69
Prom1O54990 Gm15042-201ENSMUST00000120212 883 ntBASIC38,06■■■■□ 3,68
Prom1O54990 Gm15045-201ENSMUST00000117359 883 ntBASIC37,26■■■■□ 3,56
Prom1O54990 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC36,96■■■■□ 3,51
Prom1O54990 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC36,93■■■■□ 3,5
Prom1O54990 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC36,88■■■■□ 3,49
Prom1O54990 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC36,63■■■■□ 3,45
Prom1O54990 Gm23366-201ENSMUST00000175022 89 ntBASIC36,47■■■■□ 3,43
Prom1O54990 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC36,47■■■■□ 3,43
Prom1O54990 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC36,25■■■■□ 3,39
Prom1O54990 AC153911.1-202ENSMUST00000218534 1034 ntBASIC35,61■■■■□ 3,29
Prom1O54990 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC35,6■■■■□ 3,29
Prom1O54990 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC35,52■■■■□ 3,28
Prom1O54990 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC35,38■■■■□ 3,25
Prom1O54990 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC35,16■■■■□ 3,22
Prom1O54990 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC35,13■■■■□ 3,21
Prom1O54990 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC35,05■■■■□ 3,2
Prom1O54990 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3,19
Prom1O54990 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC34,98■■■■□ 3,19
Prom1O54990 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC34,91■■■■□ 3,18
Prom1O54990 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC34,83■■■■□ 3,17
Prom1O54990 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC34,8■■■■□ 3,16
Prom1O54990 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC34,72■■■■□ 3,15
Prom1O54990 Gm25238-201ENSMUST00000174914 89 ntBASIC34,68■■■■□ 3,14
Prom1O54990 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC34,64■■■■□ 3,14
Prom1O54990 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC34,57■■■■□ 3,12
Prom1O54990 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC34,54■■■■□ 3,12
Prom1O54990 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC34,5■■■■□ 3,11
Prom1O54990 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC34,49■■■■□ 3,11
Prom1O54990 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC34,18■■■■□ 3,06
Prom1O54990 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC34,09■■■■□ 3,05
Prom1O54990 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC34,08■■■■□ 3,05
Prom1O54990 Psd-208ENSMUST00000224556 2034 ntBASIC33,84■■■■□ 3,01
Prom1O54990 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC33,83■■■■□ 3,01
Prom1O54990 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC33,81■■■■□ 3
Prom1O54990 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC33,69■■■□□ 2,98
Prom1O54990 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC33,61■■■□□ 2,97
Prom1O54990 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC33,56■■■□□ 2,96
Prom1O54990 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC33,45■■■□□ 2,95
Prom1O54990 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC33,41■■■□□ 2,94
Prom1O54990 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC33,36■■■□□ 2,93
Prom1O54990 Gm27325-201ENSMUST00000175467 74 ntBASIC33,32■■■□□ 2,92
Prom1O54990 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC33,28■■■□□ 2,92
Prom1O54990 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC33,24■■■□□ 2,91
Prom1O54990 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC33,19■■■□□ 2,9
Prom1O54990 Gm25262-201ENSMUST00000174934 133 ntBASIC33,17■■■□□ 2,9
Prom1O54990 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC32,97■■■□□ 2,87
Prom1O54990 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC32,91■■■□□ 2,86
Prom1O54990 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC32,88■■■□□ 2,85
Prom1O54990 Rab21-202ENSMUST00000218831 843 ntBASIC32,79■■■□□ 2,84
Prom1O54990 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC32,78■■■□□ 2,84
Prom1O54990 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC32,77■■■□□ 2,84
Prom1O54990 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC32,75■■■□□ 2,83
Prom1O54990 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC32,75■■■□□ 2,83
Prom1O54990 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC32,74■■■□□ 2,83
Prom1O54990 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC32,71■■■□□ 2,83
Prom1O54990 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC32,7■■■□□ 2,82
Prom1O54990 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC32,61■■■□□ 2,81
Prom1O54990 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC32,6■■■□□ 2,81
Prom1O54990 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC32,58■■■□□ 2,81
Prom1O54990 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC32,56■■■□□ 2,8
Prom1O54990 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC32,56■■■□□ 2,8
Prom1O54990 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC32,5■■■□□ 2,79
Prom1O54990 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC32,48■■■□□ 2,79
Prom1O54990 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC32,42■■■□□ 2,78
Prom1O54990 Gm26115-201ENSMUST00000175605 87 ntBASIC32,41■■■□□ 2,78
Prom1O54990 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC32,39■■■□□ 2,78
Prom1O54990 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC32,36■■■□□ 2,77
Prom1O54990 Gm8109-201ENSMUST00000194076 746 ntBASIC32,34■■■□□ 2,77
Prom1O54990 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC32,3■■■□□ 2,76
Prom1O54990 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC32,28■■■□□ 2,76
Prom1O54990 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC32,27■■■□□ 2,76
Prom1O54990 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC32,25■■■□□ 2,75
Prom1O54990 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC32,22■■■□□ 2,75
Prom1O54990 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC32,22■■■□□ 2,75
Prom1O54990 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC32,17■■■□□ 2,74
Prom1O54990 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC32,17■■■□□ 2,74
Prom1O54990 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC32,15■■■□□ 2,74
Prom1O54990 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC32,12■■■□□ 2,73
Prom1O54990 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC32,06■■■□□ 2,72
Prom1O54990 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC32,05■■■□□ 2,72
Prom1O54990 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC32,01■■■□□ 2,71
Prom1O54990 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC32■■■□□ 2,71
Prom1O54990 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC31,95■■■□□ 2,71
Prom1O54990 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC31,94■■■□□ 2,7
Prom1O54990 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC31,89■■■□□ 2,7
Prom1O54990 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC31,84■■■□□ 2,69
Prom1O54990 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC31,83■■■□□ 2,69
Prom1O54990 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC31,82■■■□□ 2,68
Prom1O54990 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC31,76■■■□□ 2,68
Prom1O54990 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC31,74■■■□□ 2,67
Prom1O54990 Gm10524-201ENSMUST00000181931 1893 ntBASIC31,72■■■□□ 2,67
Prom1O54990 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC31,72■■■□□ 2,67
Prom1O54990 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC31,71■■■□□ 2,67
Prom1O54990 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC31,7■■■□□ 2,67
Prom1O54990 Gm17082-201ENSMUST00000166043 1091 ntBASIC31,7■■■□□ 2,67
Prom1O54990 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC31,67■■■□□ 2,66
Retrieved 100 of 76,532 protein–RNA pairs in 12,3 ms