Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC25.58■■□□□ 1.69
CBX4O00257 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CBX4O00257 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC25.58■■□□□ 1.69
CBX4O00257 CEP120-209ENST00000515110 606 ntTSL 3 BASIC25.58■■□□□ 1.69
CBX4O00257 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC25.58■■□□□ 1.69
CBX4O00257 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
CBX4O00257 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC25.57■■□□□ 1.68
CBX4O00257 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
CBX4O00257 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC25.57■■□□□ 1.68
CBX4O00257 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC25.57■■□□□ 1.68
CBX4O00257 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
CBX4O00257 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
CBX4O00257 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC25.56■■□□□ 1.68
CBX4O00257 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC25.56■■□□□ 1.68
CBX4O00257 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC25.56■■□□□ 1.68
CBX4O00257 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC25.56■■□□□ 1.68
CBX4O00257 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC25.56■■□□□ 1.68
CBX4O00257 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
CBX4O00257 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC25.55■■□□□ 1.68
CBX4O00257 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
CBX4O00257 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC25.55■■□□□ 1.68
CBX4O00257 AC022413.1-201ENST00000624602 984 ntBASIC25.55■■□□□ 1.68
CBX4O00257 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC25.55■■□□□ 1.68
CBX4O00257 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC25.55■■□□□ 1.68
CBX4O00257 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC25.55■■□□□ 1.68
CBX4O00257 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
CBX4O00257 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
CBX4O00257 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
CBX4O00257 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC25.54■■□□□ 1.68
CBX4O00257 GPX1-201ENST00000419349 1106 ntBASIC25.54■■□□□ 1.68
CBX4O00257 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
CBX4O00257 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC25.53■■□□□ 1.68
CBX4O00257 AC142086.6-201ENST00000621154 1765 ntBASIC25.53■■□□□ 1.68
CBX4O00257 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
CBX4O00257 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC25.52■■□□□ 1.68
CBX4O00257 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC25.52■■□□□ 1.68
CBX4O00257 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
CBX4O00257 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
CBX4O00257 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC25.51■■□□□ 1.67
CBX4O00257 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC25.51■■□□□ 1.67
CBX4O00257 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC25.51■■□□□ 1.67
CBX4O00257 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC25.51■■□□□ 1.67
CBX4O00257 MED25-210ENST00000612854 801 ntTSL 5 BASIC25.51■■□□□ 1.67
CBX4O00257 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
CBX4O00257 MED25-214ENST00000622402 642 ntTSL 5 BASIC25.51■■□□□ 1.67
CBX4O00257 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
CBX4O00257 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC25.5■■□□□ 1.67
CBX4O00257 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC25.5■■□□□ 1.67
CBX4O00257 LINC01003-201ENST00000564834 1764 ntBASIC25.5■■□□□ 1.67
CBX4O00257 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC25.5■■□□□ 1.67
CBX4O00257 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
CBX4O00257 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC25.49■■□□□ 1.67
CBX4O00257 AC126177.7-201ENST00000547904 679 ntBASIC25.49■■□□□ 1.67
CBX4O00257 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
CBX4O00257 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC25.48■■□□□ 1.67
CBX4O00257 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC25.48■■□□□ 1.67
CBX4O00257 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC25.48■■□□□ 1.67
CBX4O00257 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC25.48■■□□□ 1.67
CBX4O00257 AC060814.1-201ENST00000554326 538 ntBASIC25.48■■□□□ 1.67
CBX4O00257 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC25.48■■□□□ 1.67
CBX4O00257 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
CBX4O00257 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC25.48■■□□□ 1.67
CBX4O00257 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC25.48■■□□□ 1.67
CBX4O00257 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
CBX4O00257 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC25.47■■□□□ 1.67
CBX4O00257 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC25.46■■□□□ 1.67
CBX4O00257 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
CBX4O00257 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
CBX4O00257 RARRES2P2-201ENST00000394842 485 ntBASIC25.46■■□□□ 1.67
CBX4O00257 AL359258.2-201ENST00000564063 1566 ntBASIC25.46■■□□□ 1.67
CBX4O00257 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC25.46■■□□□ 1.67
CBX4O00257 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC25.45■■□□□ 1.66
CBX4O00257 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
CBX4O00257 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC25.45■■□□□ 1.66
CBX4O00257 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC25.44■■□□□ 1.66
CBX4O00257 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC25.44■■□□□ 1.66
CBX4O00257 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
CBX4O00257 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
CBX4O00257 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC25.44■■□□□ 1.66
CBX4O00257 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
CBX4O00257 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
CBX4O00257 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
CBX4O00257 BX255925.1-201ENST00000566954 1854 ntBASIC25.43■■□□□ 1.66
CBX4O00257 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
CBX4O00257 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
CBX4O00257 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC25.43■■□□□ 1.66
CBX4O00257 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
CBX4O00257 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
CBX4O00257 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC25.42■■□□□ 1.66
CBX4O00257 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC25.41■■□□□ 1.66
CBX4O00257 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC25.4■■□□□ 1.66
CBX4O00257 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC25.4■■□□□ 1.66
CBX4O00257 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC25.39■■□□□ 1.66
CBX4O00257 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.66
CBX4O00257 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC25.39■■□□□ 1.66
CBX4O00257 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
CBX4O00257 RNF126P1-201ENST00000567452 1320 ntBASIC25.38■■□□□ 1.65
CBX4O00257 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
CBX4O00257 HES4-202ENST00000428771 1040 ntTSL 2 BASIC25.38■■□□□ 1.65
CBX4O00257 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC25.37■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 9.9 ms