Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 SEC1P-202ENST00000473944 940 ntBASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 AL138966.2-201ENST00000621997 464 ntBASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 AC141257.4-201ENST00000634557 245 ntBASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 AC136944.6-201ENST00000634818 245 ntBASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 UROS-202ENST00000368778 1556 ntTSL 2 BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
AP4E1Q9UPM8 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 SNCG-201ENST00000348795 684 ntTSL 2 BASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 MIR149-201ENST00000384879 89 ntBASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 AC211429.1-201ENST00000415277 523 ntBASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 LIN28AP1-201ENST00000429574 405 ntBASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 ETFA-216ENST00000560726 942 ntTSL 3 BASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 AC005363.2-201ENST00000618631 242 ntBASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 AC009102.3-201ENST00000623118 1491 ntBASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC19.13■□□□□ 0.65
AP4E1Q9UPM8 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 SDHAP2-201ENST00000455183 2001 ntBASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 AL162741.1-201ENST00000565563 1558 ntBASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 AP000523.1-201ENST00000398242 1049 ntBASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 AC113347.1-201ENST00000413321 391 ntBASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 ATP5G1P1-201ENST00000448724 379 ntBASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 AC010240.3-201ENST00000607688 395 ntBASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
AP4E1Q9UPM8 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms