Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
USP42Q9H9J4 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
USP42Q9H9J4 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC23.37■■□□□ 1.33
USP42Q9H9J4 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
USP42Q9H9J4 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC23.37■■□□□ 1.33
USP42Q9H9J4 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
USP42Q9H9J4 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC23.37■■□□□ 1.33
USP42Q9H9J4 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC23.37■■□□□ 1.33
USP42Q9H9J4 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
USP42Q9H9J4 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
USP42Q9H9J4 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC23.37■■□□□ 1.33
USP42Q9H9J4 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC23.37■■□□□ 1.33
USP42Q9H9J4 AL049812.1-201ENST00000432563 2267 ntBASIC23.37■■□□□ 1.33
USP42Q9H9J4 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC23.37■■□□□ 1.33
USP42Q9H9J4 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
USP42Q9H9J4 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
USP42Q9H9J4 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC23.36■■□□□ 1.33
USP42Q9H9J4 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
USP42Q9H9J4 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
USP42Q9H9J4 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
USP42Q9H9J4 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC23.36■■□□□ 1.33
USP42Q9H9J4 KRT18P58-201ENST00000527480 1120 ntBASIC23.36■■□□□ 1.33
USP42Q9H9J4 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC23.36■■□□□ 1.33
USP42Q9H9J4 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC23.36■■□□□ 1.33
USP42Q9H9J4 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC23.36■■□□□ 1.33
USP42Q9H9J4 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC23.36■■□□□ 1.33
USP42Q9H9J4 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC23.36■■□□□ 1.33
USP42Q9H9J4 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
USP42Q9H9J4 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
USP42Q9H9J4 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
USP42Q9H9J4 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
USP42Q9H9J4 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
USP42Q9H9J4 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
USP42Q9H9J4 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
USP42Q9H9J4 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
USP42Q9H9J4 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
USP42Q9H9J4 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
USP42Q9H9J4 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
USP42Q9H9J4 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC23.36■■□□□ 1.33
USP42Q9H9J4 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
USP42Q9H9J4 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC23.36■■□□□ 1.33
USP42Q9H9J4 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC23.36■■□□□ 1.33
USP42Q9H9J4 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC23.36■■□□□ 1.33
USP42Q9H9J4 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
USP42Q9H9J4 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
USP42Q9H9J4 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
USP42Q9H9J4 AC018712.1-201ENST00000455767 687 ntBASIC23.35■■□□□ 1.33
USP42Q9H9J4 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC23.35■■□□□ 1.33
USP42Q9H9J4 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC23.35■■□□□ 1.33
USP42Q9H9J4 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC23.35■■□□□ 1.33
USP42Q9H9J4 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC23.35■■□□□ 1.33
USP42Q9H9J4 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC23.35■■□□□ 1.33
USP42Q9H9J4 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
USP42Q9H9J4 MIR7706-201ENST00000613747 67 ntBASIC23.35■■□□□ 1.33
USP42Q9H9J4 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
USP42Q9H9J4 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
USP42Q9H9J4 AC018445.3-201ENST00000624177 1945 ntBASIC23.35■■□□□ 1.33
USP42Q9H9J4 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC23.35■■□□□ 1.33
USP42Q9H9J4 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
USP42Q9H9J4 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC23.35■■□□□ 1.33
USP42Q9H9J4 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
USP42Q9H9J4 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
USP42Q9H9J4 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
USP42Q9H9J4 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
USP42Q9H9J4 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC23.35■■□□□ 1.33
USP42Q9H9J4 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC23.35■■□□□ 1.33
USP42Q9H9J4 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC23.35■■□□□ 1.33
USP42Q9H9J4 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC23.34■■□□□ 1.33
USP42Q9H9J4 AF186996.4-201ENST00000467186 377 ntBASIC23.34■■□□□ 1.33
USP42Q9H9J4 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
USP42Q9H9J4 AC106730.1-201ENST00000566722 1090 ntBASIC23.34■■□□□ 1.33
USP42Q9H9J4 MIR5100-201ENST00000579544 119 ntBASIC23.34■■□□□ 1.33
USP42Q9H9J4 AL591684.3-201ENST00000605187 298 ntBASIC23.34■■□□□ 1.33
USP42Q9H9J4 AC114341.1-201ENST00000618070 349 ntBASIC23.34■■□□□ 1.33
USP42Q9H9J4 AC068587.9-201ENST00000641814 219 ntBASIC23.34■■□□□ 1.33
USP42Q9H9J4 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
USP42Q9H9J4 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
USP42Q9H9J4 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
USP42Q9H9J4 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC23.34■■□□□ 1.33
USP42Q9H9J4 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
USP42Q9H9J4 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC23.34■■□□□ 1.33
USP42Q9H9J4 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
USP42Q9H9J4 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC23.34■■□□□ 1.33
USP42Q9H9J4 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
USP42Q9H9J4 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC23.34■■□□□ 1.33
USP42Q9H9J4 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
USP42Q9H9J4 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
USP42Q9H9J4 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC23.34■■□□□ 1.33
USP42Q9H9J4 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
USP42Q9H9J4 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
USP42Q9H9J4 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
USP42Q9H9J4 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
USP42Q9H9J4 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
USP42Q9H9J4 HES2-202ENST00000377836 507 ntTSL 2 BASIC23.33■■□□□ 1.33
USP42Q9H9J4 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC23.33■■□□□ 1.33
USP42Q9H9J4 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
USP42Q9H9J4 RNPS1P1-201ENST00000507437 918 ntBASIC23.33■■□□□ 1.33
USP42Q9H9J4 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC23.33■■□□□ 1.33
USP42Q9H9J4 AC009065.1-201ENST00000564055 1225 ntBASIC23.33■■□□□ 1.33
USP42Q9H9J4 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC23.33■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms