Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC16.18■□□□□ 0.18
LIME1Q9H400 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
LIME1Q9H400 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
LIME1Q9H400 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC16.18■□□□□ 0.18
LIME1Q9H400 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC16.18■□□□□ 0.18
LIME1Q9H400 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIME1Q9H400 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC16.18■□□□□ 0.18
LIME1Q9H400 NUS1P1-201ENST00000446295 882 ntBASIC16.18■□□□□ 0.18
LIME1Q9H400 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC16.18■□□□□ 0.18
LIME1Q9H400 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC16.18■□□□□ 0.18
LIME1Q9H400 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LIME1Q9H400 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC16.18■□□□□ 0.18
LIME1Q9H400 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC16.18■□□□□ 0.18
LIME1Q9H400 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LIME1Q9H400 AC079602.3-201ENST00000623931 403 ntBASIC16.18■□□□□ 0.18
LIME1Q9H400 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC16.18■□□□□ 0.18
LIME1Q9H400 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC16.18■□□□□ 0.18
LIME1Q9H400 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LIME1Q9H400 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC16.18■□□□□ 0.18
LIME1Q9H400 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LIME1Q9H400 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIME1Q9H400 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIME1Q9H400 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIME1Q9H400 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIME1Q9H400 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIME1Q9H400 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIME1Q9H400 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC16.17■□□□□ 0.18
LIME1Q9H400 AL162741.1-201ENST00000565563 1558 ntBASIC16.17■□□□□ 0.18
LIME1Q9H400 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC16.17■□□□□ 0.18
LIME1Q9H400 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIME1Q9H400 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIME1Q9H400 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
LIME1Q9H400 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIME1Q9H400 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.17■□□□□ 0.18
LIME1Q9H400 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC16.17■□□□□ 0.18
LIME1Q9H400 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIME1Q9H400 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC16.17■□□□□ 0.18
LIME1Q9H400 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC16.17■□□□□ 0.18
LIME1Q9H400 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC16.17■□□□□ 0.18
LIME1Q9H400 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIME1Q9H400 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIME1Q9H400 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LIME1Q9H400 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIME1Q9H400 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.17■□□□□ 0.18
LIME1Q9H400 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.17■□□□□ 0.18
LIME1Q9H400 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC16.17■□□□□ 0.18
LIME1Q9H400 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.17■□□□□ 0.18
LIME1Q9H400 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC16.17■□□□□ 0.18
LIME1Q9H400 CALM1-205ENST00000553542 877 ntTSL 5 BASIC16.17■□□□□ 0.18
LIME1Q9H400 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.17■□□□□ 0.18
LIME1Q9H400 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.17■□□□□ 0.18
LIME1Q9H400 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.17■□□□□ 0.18
LIME1Q9H400 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LIME1Q9H400 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
LIME1Q9H400 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LIME1Q9H400 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIME1Q9H400 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIME1Q9H400 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LIME1Q9H400 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LIME1Q9H400 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LIME1Q9H400 KRT18P1-202ENST00000452408 1331 ntBASIC16.17■□□□□ 0.18
LIME1Q9H400 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LIME1Q9H400 ANKRD18DP-204ENST00000455355 1975 ntBASIC16.17■□□□□ 0.18
LIME1Q9H400 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIME1Q9H400 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIME1Q9H400 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIME1Q9H400 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIME1Q9H400 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC16.16■□□□□ 0.18
LIME1Q9H400 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIME1Q9H400 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIME1Q9H400 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LIME1Q9H400 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIME1Q9H400 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIME1Q9H400 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIME1Q9H400 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC16.16■□□□□ 0.18
LIME1Q9H400 GPAT2P1-201ENST00000444924 1672 ntBASIC16.16■□□□□ 0.18
LIME1Q9H400 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIME1Q9H400 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIME1Q9H400 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIME1Q9H400 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIME1Q9H400 TSPY19P-201ENST00000418461 509 ntBASIC16.16■□□□□ 0.18
LIME1Q9H400 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIME1Q9H400 TSPY18P-201ENST00000441642 509 ntBASIC16.16■□□□□ 0.18
LIME1Q9H400 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LIME1Q9H400 AC079776.4-201ENST00000511039 504 ntBASIC16.16■□□□□ 0.18
LIME1Q9H400 KRT8P26-201ENST00000534154 1276 ntBASIC16.16■□□□□ 0.18
LIME1Q9H400 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.16■□□□□ 0.18
LIME1Q9H400 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIME1Q9H400 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC16.16■□□□□ 0.18
LIME1Q9H400 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
LIME1Q9H400 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
LIME1Q9H400 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIME1Q9H400 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC16.16■□□□□ 0.18
LIME1Q9H400 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LIME1Q9H400 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC16.16■□□□□ 0.18
LIME1Q9H400 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIME1Q9H400 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LIME1Q9H400 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LIME1Q9H400 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LIME1Q9H400 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms