Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VRK1Q99986 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC16.29■□□□□ 0.2
VRK1Q99986 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC16.29■□□□□ 0.2
VRK1Q99986 AC007663.1-201ENST00000438948 1240 ntBASIC16.29■□□□□ 0.2
VRK1Q99986 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC16.29■□□□□ 0.2
VRK1Q99986 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC16.29■□□□□ 0.2
VRK1Q99986 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC16.29■□□□□ 0.2
VRK1Q99986 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC16.29■□□□□ 0.2
VRK1Q99986 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC16.29■□□□□ 0.2
VRK1Q99986 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC16.29■□□□□ 0.2
VRK1Q99986 CKBP1-201ENST00000565489 1086 ntBASIC16.29■□□□□ 0.2
VRK1Q99986 NT5C-211ENST00000582170 653 ntTSL 3 BASIC16.29■□□□□ 0.2
VRK1Q99986 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VRK1Q99986 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VRK1Q99986 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VRK1Q99986 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
VRK1Q99986 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VRK1Q99986 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
VRK1Q99986 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
VRK1Q99986 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VRK1Q99986 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VRK1Q99986 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VRK1Q99986 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VRK1Q99986 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VRK1Q99986 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VRK1Q99986 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC16.28■□□□□ 0.2
VRK1Q99986 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VRK1Q99986 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VRK1Q99986 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC16.28■□□□□ 0.2
VRK1Q99986 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
VRK1Q99986 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VRK1Q99986 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VRK1Q99986 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
VRK1Q99986 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VRK1Q99986 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VRK1Q99986 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VRK1Q99986 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
VRK1Q99986 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VRK1Q99986 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VRK1Q99986 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VRK1Q99986 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC16.28■□□□□ 0.2
VRK1Q99986 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC16.28■□□□□ 0.2
VRK1Q99986 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VRK1Q99986 AC104076.2-201ENST00000448912 469 ntBASIC16.28■□□□□ 0.2
VRK1Q99986 DUX4L26-201ENST00000489078 1255 ntBASIC16.28■□□□□ 0.2
VRK1Q99986 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
VRK1Q99986 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC16.28■□□□□ 0.2
VRK1Q99986 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
VRK1Q99986 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VRK1Q99986 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
VRK1Q99986 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VRK1Q99986 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VRK1Q99986 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC16.28■□□□□ 0.2
VRK1Q99986 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
VRK1Q99986 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VRK1Q99986 USP49-202ENST00000373010 2446 ntTSL 5 BASIC16.28■□□□□ 0.2
VRK1Q99986 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VRK1Q99986 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VRK1Q99986 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VRK1Q99986 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
VRK1Q99986 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VRK1Q99986 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC16.28■□□□□ 0.2
VRK1Q99986 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
VRK1Q99986 ZNF815P-204ENST00000434898 1737 ntBASIC16.28■□□□□ 0.2
VRK1Q99986 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
VRK1Q99986 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VRK1Q99986 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
VRK1Q99986 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VRK1Q99986 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC16.27■□□□□ 0.2
VRK1Q99986 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VRK1Q99986 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
VRK1Q99986 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC16.27■□□□□ 0.2
VRK1Q99986 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VRK1Q99986 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.27■□□□□ 0.2
VRK1Q99986 AC090164.3-201ENST00000610780 2143 ntBASIC16.27■□□□□ 0.2
VRK1Q99986 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VRK1Q99986 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC16.27■□□□□ 0.2
VRK1Q99986 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VRK1Q99986 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VRK1Q99986 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
VRK1Q99986 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
VRK1Q99986 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VRK1Q99986 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.2
VRK1Q99986 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC16.27■□□□□ 0.2
VRK1Q99986 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC16.27■□□□□ 0.2
VRK1Q99986 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC16.27■□□□□ 0.2
VRK1Q99986 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC16.27■□□□□ 0.2
VRK1Q99986 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.27■□□□□ 0.2
VRK1Q99986 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.27■□□□□ 0.2
VRK1Q99986 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.27■□□□□ 0.2
VRK1Q99986 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC16.27■□□□□ 0.2
VRK1Q99986 AC010653.2-201ENST00000623505 997 ntBASIC16.27■□□□□ 0.2
VRK1Q99986 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VRK1Q99986 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
VRK1Q99986 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VRK1Q99986 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
VRK1Q99986 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC16.27■□□□□ 0.19
VRK1Q99986 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
VRK1Q99986 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VRK1Q99986 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms