Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.06■□□□□ 0.16
COL12A1Q99715 MIR6752-201ENST00000618442 71 ntBASIC16.06■□□□□ 0.16
COL12A1Q99715 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
COL12A1Q99715 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC16.06■□□□□ 0.16
COL12A1Q99715 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.06■□□□□ 0.16
COL12A1Q99715 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
COL12A1Q99715 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC16.06■□□□□ 0.16
COL12A1Q99715 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC16.06■□□□□ 0.16
COL12A1Q99715 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL12A1Q99715 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
COL12A1Q99715 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
COL12A1Q99715 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
COL12A1Q99715 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.06■□□□□ 0.16
COL12A1Q99715 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC16.06■□□□□ 0.16
COL12A1Q99715 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL12A1Q99715 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC16.06■□□□□ 0.16
COL12A1Q99715 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL12A1Q99715 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL12A1Q99715 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC16.06■□□□□ 0.16
COL12A1Q99715 KRT18P27-201ENST00000427733 1299 ntBASIC16.05■□□□□ 0.16
COL12A1Q99715 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.05■□□□□ 0.16
COL12A1Q99715 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.05■□□□□ 0.16
COL12A1Q99715 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.05■□□□□ 0.16
COL12A1Q99715 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL12A1Q99715 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL12A1Q99715 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
COL12A1Q99715 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL12A1Q99715 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL12A1Q99715 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC16.05■□□□□ 0.16
COL12A1Q99715 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.05■□□□□ 0.16
COL12A1Q99715 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.05■□□□□ 0.16
COL12A1Q99715 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.05■□□□□ 0.16
COL12A1Q99715 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.05■□□□□ 0.16
COL12A1Q99715 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC16.05■□□□□ 0.16
COL12A1Q99715 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
COL12A1Q99715 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC16.05■□□□□ 0.16
COL12A1Q99715 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC16.05■□□□□ 0.16
COL12A1Q99715 GOLGA6L17P-202ENST00000614358 1398 ntBASIC16.05■□□□□ 0.16
COL12A1Q99715 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL12A1Q99715 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC16.05■□□□□ 0.16
COL12A1Q99715 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL12A1Q99715 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.05■□□□□ 0.16
COL12A1Q99715 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC16.05■□□□□ 0.16
COL12A1Q99715 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL12A1Q99715 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.05■□□□□ 0.16
COL12A1Q99715 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC16.05■□□□□ 0.16
COL12A1Q99715 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL12A1Q99715 AP002414.3-201ENST00000589352 1468 ntBASIC16.05■□□□□ 0.16
COL12A1Q99715 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL12A1Q99715 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL12A1Q99715 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL12A1Q99715 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL12A1Q99715 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL12A1Q99715 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL12A1Q99715 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL12A1Q99715 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL12A1Q99715 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC16.04■□□□□ 0.16
COL12A1Q99715 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC16.04■□□□□ 0.16
COL12A1Q99715 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL12A1Q99715 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL12A1Q99715 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL12A1Q99715 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL12A1Q99715 TSEN15P1-201ENST00000423257 515 ntBASIC16.04■□□□□ 0.16
COL12A1Q99715 DDT-206ENST00000430101 573 ntTSL 2 BASIC16.04■□□□□ 0.16
COL12A1Q99715 TAF8-206ENST00000472818 719 ntTSL 2 BASIC16.04■□□□□ 0.16
COL12A1Q99715 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.04■□□□□ 0.16
COL12A1Q99715 RN7SL204P-201ENST00000582831 262 ntBASIC16.04■□□□□ 0.16
COL12A1Q99715 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
COL12A1Q99715 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC16.04■□□□□ 0.16
COL12A1Q99715 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL12A1Q99715 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL12A1Q99715 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL12A1Q99715 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
COL12A1Q99715 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL12A1Q99715 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
COL12A1Q99715 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL12A1Q99715 STOM-202ENST00000347359 870 ntTSL 2 BASIC16.04■□□□□ 0.16
COL12A1Q99715 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.04■□□□□ 0.16
COL12A1Q99715 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL12A1Q99715 AC109322.1-201ENST00000524499 1264 ntBASIC16.04■□□□□ 0.16
COL12A1Q99715 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL12A1Q99715 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC16.04■□□□□ 0.16
COL12A1Q99715 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.04■□□□□ 0.16
COL12A1Q99715 AL606495.2-201ENST00000605867 535 ntBASIC16.04■□□□□ 0.16
COL12A1Q99715 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.04■□□□□ 0.16
COL12A1Q99715 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC16.04■□□□□ 0.16
COL12A1Q99715 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
COL12A1Q99715 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL12A1Q99715 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC16.03■□□□□ 0.16
COL12A1Q99715 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.03■□□□□ 0.16
COL12A1Q99715 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL12A1Q99715 NOP2-220ENST00000545915 630 ntTSL 2 BASIC16.03■□□□□ 0.16
COL12A1Q99715 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC16.03■□□□□ 0.16
COL12A1Q99715 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.03■□□□□ 0.16
COL12A1Q99715 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
COL12A1Q99715 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL12A1Q99715 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL12A1Q99715 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL12A1Q99715 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC16.03■□□□□ 0.16
COL12A1Q99715 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms