Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC14.27□□□□□ -0.12
CCDC140Q96MF4 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC140Q96MF4 AL354751.1-201ENST00000412768 1863 ntBASIC14.27□□□□□ -0.12
CCDC140Q96MF4 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC140Q96MF4 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC14.27□□□□□ -0.12
CCDC140Q96MF4 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC14.27□□□□□ -0.12
CCDC140Q96MF4 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC14.27□□□□□ -0.12
CCDC140Q96MF4 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC14.27□□□□□ -0.12
CCDC140Q96MF4 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC14.27□□□□□ -0.12
CCDC140Q96MF4 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC140Q96MF4 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC140Q96MF4 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC14.27□□□□□ -0.12
CCDC140Q96MF4 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC14.27□□□□□ -0.12
CCDC140Q96MF4 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC140Q96MF4 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC140Q96MF4 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC14.27□□□□□ -0.12
CCDC140Q96MF4 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
CCDC140Q96MF4 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC140Q96MF4 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC140Q96MF4 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC140Q96MF4 TERF1P1-201ENST00000311003 1181 ntBASIC14.27□□□□□ -0.13
CCDC140Q96MF4 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC14.27□□□□□ -0.13
CCDC140Q96MF4 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC140Q96MF4 AC211429.1-201ENST00000415277 523 ntBASIC14.27□□□□□ -0.13
CCDC140Q96MF4 CD70-202ENST00000423145 881 ntTSL 2 BASIC14.27□□□□□ -0.13
CCDC140Q96MF4 LIN28AP1-201ENST00000429574 405 ntBASIC14.27□□□□□ -0.13
CCDC140Q96MF4 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC14.27□□□□□ -0.13
CCDC140Q96MF4 MIR3180-4-201ENST00000582223 153 ntBASIC14.27□□□□□ -0.13
CCDC140Q96MF4 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC14.27□□□□□ -0.13
CCDC140Q96MF4 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC14.27□□□□□ -0.13
CCDC140Q96MF4 AC005363.2-201ENST00000618631 242 ntBASIC14.27□□□□□ -0.13
CCDC140Q96MF4 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC14.27□□□□□ -0.13
CCDC140Q96MF4 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC14.27□□□□□ -0.13
CCDC140Q96MF4 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC140Q96MF4 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC140Q96MF4 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC140Q96MF4 ESPNP-201ENST00000270691 2015 ntBASIC14.27□□□□□ -0.13
CCDC140Q96MF4 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC14.27□□□□□ -0.13
CCDC140Q96MF4 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
CCDC140Q96MF4 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC140Q96MF4 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC140Q96MF4 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 AC135776.1-201ENST00000319817 2481 ntBASIC14.26□□□□□ -0.13
CCDC140Q96MF4 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 ATP5G1P1-201ENST00000448724 379 ntBASIC14.26□□□□□ -0.13
CCDC140Q96MF4 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 AC009065.1-201ENST00000564055 1225 ntBASIC14.26□□□□□ -0.13
CCDC140Q96MF4 LINC01023-201ENST00000606054 436 ntBASIC14.26□□□□□ -0.13
CCDC140Q96MF4 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC140Q96MF4 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms