Protein–RNA interactions for Protein: Q96DD0

LRRC39, Leucine-rich repeat-containing protein 39, humanhuman

Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC39Q96DD0 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LRRC39Q96DD0 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
LRRC39Q96DD0 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.64■□□□□ 0.57
LRRC39Q96DD0 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LRRC39Q96DD0 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.64■□□□□ 0.57
LRRC39Q96DD0 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
LRRC39Q96DD0 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
LRRC39Q96DD0 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
LRRC39Q96DD0 AL096828.2-201ENST00000567259 1965 ntBASIC18.64■□□□□ 0.57
LRRC39Q96DD0 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LRRC39Q96DD0 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LRRC39Q96DD0 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LRRC39Q96DD0 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.64■□□□□ 0.57
LRRC39Q96DD0 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LRRC39Q96DD0 AC134043.2-201ENST00000624206 2238 ntBASIC18.64■□□□□ 0.57
LRRC39Q96DD0 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 AC020916.1-201ENST00000587762 1774 ntBASIC18.63■□□□□ 0.57
LRRC39Q96DD0 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 ITM2C-210ENST00000620962 501 ntBASIC18.63■□□□□ 0.57
LRRC39Q96DD0 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 HCG11-201ENST00000411553 5696 ntBASIC18.63■□□□□ 0.57
LRRC39Q96DD0 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
LRRC39Q96DD0 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 AC090340.1-201ENST00000620778 4980 ntBASIC18.62■□□□□ 0.57
LRRC39Q96DD0 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 AC097488.1-201ENST00000507834 756 ntBASIC18.62■□□□□ 0.57
LRRC39Q96DD0 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 CYGB-204ENST00000589342 815 ntTSL 3 BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 KRT8P7-201ENST00000533003 1432 ntBASIC18.62■□□□□ 0.57
LRRC39Q96DD0 HOXB1-202ENST00000577092 1414 ntBASIC18.62■□□□□ 0.57
LRRC39Q96DD0 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 AL163051.1-201ENST00000569214 1512 ntBASIC18.62■□□□□ 0.57
LRRC39Q96DD0 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
LRRC39Q96DD0 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LRRC39Q96DD0 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LRRC39Q96DD0 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LRRC39Q96DD0 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
LRRC39Q96DD0 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LRRC39Q96DD0 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LRRC39Q96DD0 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LRRC39Q96DD0 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LRRC39Q96DD0 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms