Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC19.14■□□□□ 0.66
ATG4AQ8WYN0 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC19.14■□□□□ 0.66
ATG4AQ8WYN0 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
ATG4AQ8WYN0 AC138028.4-201ENST00000564984 1845 ntBASIC19.14■□□□□ 0.65
ATG4AQ8WYN0 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
ATG4AQ8WYN0 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
ATG4AQ8WYN0 PRORSD1P-201ENST00000295112 541 ntBASIC19.14■□□□□ 0.65
ATG4AQ8WYN0 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
ATG4AQ8WYN0 MIR564-202ENST00000385049 94 ntBASIC19.14■□□□□ 0.65
ATG4AQ8WYN0 KRT18P29-201ENST00000397031 1267 ntBASIC19.14■□□□□ 0.65
ATG4AQ8WYN0 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
ATG4AQ8WYN0 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC19.14■□□□□ 0.65
ATG4AQ8WYN0 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC19.14■□□□□ 0.65
ATG4AQ8WYN0 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC19.14■□□□□ 0.65
ATG4AQ8WYN0 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC19.14■□□□□ 0.65
ATG4AQ8WYN0 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.14■□□□□ 0.65
ATG4AQ8WYN0 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC19.14■□□□□ 0.65
ATG4AQ8WYN0 AC134043.2-201ENST00000624206 2238 ntBASIC19.14■□□□□ 0.65
ATG4AQ8WYN0 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
ATG4AQ8WYN0 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
ATG4AQ8WYN0 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
ATG4AQ8WYN0 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
ATG4AQ8WYN0 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
ATG4AQ8WYN0 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
ATG4AQ8WYN0 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
ATG4AQ8WYN0 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.14■□□□□ 0.65
ATG4AQ8WYN0 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC19.14■□□□□ 0.65
ATG4AQ8WYN0 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
ATG4AQ8WYN0 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
ATG4AQ8WYN0 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
ATG4AQ8WYN0 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 ELP6-205ENST00000439305 880 ntTSL 2 BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 MCCD1P1-208ENST00000445732 328 ntBASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
ATG4AQ8WYN0 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
ATG4AQ8WYN0 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC19.12■□□□□ 0.65
ATG4AQ8WYN0 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ATG4AQ8WYN0 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC19.12■□□□□ 0.65
ATG4AQ8WYN0 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ATG4AQ8WYN0 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ATG4AQ8WYN0 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ATG4AQ8WYN0 KRT8P50-201ENST00000562022 1438 ntBASIC19.12■□□□□ 0.65
ATG4AQ8WYN0 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ATG4AQ8WYN0 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ATG4AQ8WYN0 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
ATG4AQ8WYN0 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
ATG4AQ8WYN0 AC098590.1-201ENST00000468126 897 ntBASIC19.12■□□□□ 0.65
ATG4AQ8WYN0 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC19.12■□□□□ 0.65
ATG4AQ8WYN0 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC19.12■□□□□ 0.65
ATG4AQ8WYN0 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.12■□□□□ 0.65
ATG4AQ8WYN0 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
ATG4AQ8WYN0 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ATG4AQ8WYN0 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ATG4AQ8WYN0 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ATG4AQ8WYN0 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ATG4AQ8WYN0 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ATG4AQ8WYN0 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ATG4AQ8WYN0 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ATG4AQ8WYN0 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ATG4AQ8WYN0 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
ATG4AQ8WYN0 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
ATG4AQ8WYN0 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ATG4AQ8WYN0 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
ATG4AQ8WYN0 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
ATG4AQ8WYN0 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ATG4AQ8WYN0 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
ATG4AQ8WYN0 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms