Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCNA1P78396 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCNA1P78396 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCNA1P78396 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCNA1P78396 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
CCNA1P78396 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCNA1P78396 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CCNA1P78396 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CCNA1P78396 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC20.94■□□□□ 0.94
CCNA1P78396 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCNA1P78396 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CCNA1P78396 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CCNA1P78396 PCDHAC2-203ENST00000615316 3011 ntBASIC20.94■□□□□ 0.94
CCNA1P78396 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCNA1P78396 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCNA1P78396 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCNA1P78396 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
CCNA1P78396 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.94■□□□□ 0.94
CCNA1P78396 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCNA1P78396 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
CCNA1P78396 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCNA1P78396 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.94■□□□□ 0.94
CCNA1P78396 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCNA1P78396 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCNA1P78396 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCNA1P78396 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCNA1P78396 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCNA1P78396 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCNA1P78396 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.93■□□□□ 0.94
CCNA1P78396 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCNA1P78396 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCNA1P78396 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCNA1P78396 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC20.93■□□□□ 0.94
CCNA1P78396 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC20.93■□□□□ 0.94
CCNA1P78396 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC20.93■□□□□ 0.94
CCNA1P78396 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC20.93■□□□□ 0.94
CCNA1P78396 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCNA1P78396 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCNA1P78396 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCNA1P78396 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC20.93■□□□□ 0.94
CCNA1P78396 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
CCNA1P78396 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCNA1P78396 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCNA1P78396 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.93■□□□□ 0.94
CCNA1P78396 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCNA1P78396 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCNA1P78396 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC20.92■□□□□ 0.94
CCNA1P78396 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCNA1P78396 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCNA1P78396 AL032819.2-201ENST00000624543 2162 ntBASIC20.92■□□□□ 0.94
CCNA1P78396 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
CCNA1P78396 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCNA1P78396 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCNA1P78396 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCNA1P78396 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCNA1P78396 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCNA1P78396 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCNA1P78396 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCNA1P78396 HIST2H3DP1-201ENST00000401004 416 ntBASIC20.92■□□□□ 0.94
CCNA1P78396 RPP21-221ENST00000428040 594 ntTSL 2 BASIC20.92■□□□□ 0.94
CCNA1P78396 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCNA1P78396 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCNA1P78396 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCNA1P78396 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC20.92■□□□□ 0.94
CCNA1P78396 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC20.92■□□□□ 0.94
CCNA1P78396 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC20.92■□□□□ 0.94
CCNA1P78396 KRT18P58-201ENST00000527480 1120 ntBASIC20.92■□□□□ 0.94
CCNA1P78396 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCNA1P78396 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
CCNA1P78396 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
CCNA1P78396 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC20.92■□□□□ 0.94
CCNA1P78396 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC20.92■□□□□ 0.94
CCNA1P78396 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCNA1P78396 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCNA1P78396 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCNA1P78396 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCNA1P78396 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCNA1P78396 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC20.92■□□□□ 0.94
CCNA1P78396 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.92■□□□□ 0.94
CCNA1P78396 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC20.92■□□□□ 0.94
CCNA1P78396 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCNA1P78396 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
CCNA1P78396 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCNA1P78396 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.91■□□□□ 0.94
CCNA1P78396 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
CCNA1P78396 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.91■□□□□ 0.94
CCNA1P78396 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCNA1P78396 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCNA1P78396 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCNA1P78396 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCNA1P78396 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCNA1P78396 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
CCNA1P78396 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCNA1P78396 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCNA1P78396 RCN1P2-201ENST00000398357 915 ntBASIC20.91■□□□□ 0.94
CCNA1P78396 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCNA1P78396 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCNA1P78396 KRT18P13-201ENST00000400056 1290 ntBASIC20.91■□□□□ 0.94
CCNA1P78396 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCNA1P78396 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms