Protein–RNA interactions for Protein: P55055

NR1H2, Oxysterols receptor LXR-beta, humanhuman

Predictions only

Length 460 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H2P55055 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
NR1H2P55055 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NR1H2P55055 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NR1H2P55055 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
NR1H2P55055 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NR1H2P55055 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
NR1H2P55055 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
NR1H2P55055 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
NR1H2P55055 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC17.5■□□□□ 0.39
NR1H2P55055 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.5■□□□□ 0.39
NR1H2P55055 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
NR1H2P55055 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
NR1H2P55055 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NR1H2P55055 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
NR1H2P55055 AC135776.1-201ENST00000319817 2481 ntBASIC17.49■□□□□ 0.39
NR1H2P55055 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC17.49■□□□□ 0.39
NR1H2P55055 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
NR1H2P55055 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.49■□□□□ 0.39
NR1H2P55055 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
NR1H2P55055 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
NR1H2P55055 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
NR1H2P55055 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
NR1H2P55055 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
NR1H2P55055 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
NR1H2P55055 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
NR1H2P55055 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
NR1H2P55055 AC133681.1-201ENST00000465482 601 ntBASIC17.49■□□□□ 0.39
NR1H2P55055 PRKY-204ENST00000533551 1019 ntBASIC17.49■□□□□ 0.39
NR1H2P55055 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
NR1H2P55055 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC17.49■□□□□ 0.39
NR1H2P55055 AP001412.1-201ENST00000608405 714 ntBASIC17.49■□□□□ 0.39
NR1H2P55055 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
NR1H2P55055 AC006557.6-201ENST00000623071 864 ntBASIC17.49■□□□□ 0.39
NR1H2P55055 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
NR1H2P55055 PHGDH-210ENST00000641115 1638 ntBASIC17.49■□□□□ 0.39
NR1H2P55055 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
NR1H2P55055 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
NR1H2P55055 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.49■□□□□ 0.39
NR1H2P55055 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
NR1H2P55055 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
NR1H2P55055 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
NR1H2P55055 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
NR1H2P55055 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
NR1H2P55055 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
NR1H2P55055 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
NR1H2P55055 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.48■□□□□ 0.39
NR1H2P55055 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NR1H2P55055 AL135905.2-201ENST00000584934 1404 ntBASIC17.48■□□□□ 0.39
NR1H2P55055 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
NR1H2P55055 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC17.48■□□□□ 0.39
NR1H2P55055 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.48■□□□□ 0.39
NR1H2P55055 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.48■□□□□ 0.39
NR1H2P55055 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
NR1H2P55055 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NR1H2P55055 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
NR1H2P55055 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
NR1H2P55055 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
NR1H2P55055 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
NR1H2P55055 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
NR1H2P55055 THEM4-205ENST00000489410 643 ntTSL 2 BASIC17.48■□□□□ 0.39
NR1H2P55055 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC17.48■□□□□ 0.39
NR1H2P55055 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.48■□□□□ 0.39
NR1H2P55055 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
NR1H2P55055 MIR4497-201ENST00000583208 89 ntBASIC17.48■□□□□ 0.39
NR1H2P55055 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.48■□□□□ 0.39
NR1H2P55055 AL031963.3-201ENST00000606441 850 ntBASIC17.48■□□□□ 0.39
NR1H2P55055 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.48■□□□□ 0.39
NR1H2P55055 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NR1H2P55055 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC17.48■□□□□ 0.39
NR1H2P55055 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
NR1H2P55055 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NR1H2P55055 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
NR1H2P55055 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
NR1H2P55055 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.48■□□□□ 0.39
NR1H2P55055 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.48■□□□□ 0.39
NR1H2P55055 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
NR1H2P55055 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
NR1H2P55055 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
NR1H2P55055 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
NR1H2P55055 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NR1H2P55055 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NR1H2P55055 AC108860.2-201ENST00000562760 2183 ntBASIC17.47■□□□□ 0.39
NR1H2P55055 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
NR1H2P55055 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
NR1H2P55055 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NR1H2P55055 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NR1H2P55055 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NR1H2P55055 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.47■□□□□ 0.39
NR1H2P55055 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC17.47■□□□□ 0.39
NR1H2P55055 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NR1H2P55055 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
NR1H2P55055 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NR1H2P55055 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NR1H2P55055 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NR1H2P55055 AC012618.2-201ENST00000428058 849 ntBASIC17.47■□□□□ 0.39
NR1H2P55055 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NR1H2P55055 LY6E-205ENST00000519611 635 ntTSL 3 BASIC17.47■□□□□ 0.39
NR1H2P55055 AC023632.3-201ENST00000521633 145 ntBASIC17.47■□□□□ 0.39
NR1H2P55055 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
NR1H2P55055 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms