Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SOX2P48431 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
SOX2P48431 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SOX2P48431 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SOX2P48431 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SOX2P48431 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SOX2P48431 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SOX2P48431 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SOX2P48431 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
SOX2P48431 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC16.27■□□□□ 0.2
SOX2P48431 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.2
SOX2P48431 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC16.27■□□□□ 0.2
SOX2P48431 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC16.27■□□□□ 0.2
SOX2P48431 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC16.27■□□□□ 0.2
SOX2P48431 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
SOX2P48431 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
SOX2P48431 UNC93B5-201ENST00000530315 699 ntBASIC16.27■□□□□ 0.2
SOX2P48431 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC16.27■□□□□ 0.2
SOX2P48431 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SOX2P48431 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC16.27■□□□□ 0.2
SOX2P48431 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
SOX2P48431 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SOX2P48431 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SOX2P48431 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC16.27■□□□□ 0.19
SOX2P48431 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC16.27■□□□□ 0.19
SOX2P48431 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC16.27■□□□□ 0.19
SOX2P48431 FLYWCH1P1-201ENST00000460917 1874 ntBASIC16.27■□□□□ 0.19
SOX2P48431 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
SOX2P48431 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX2P48431 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.26■□□□□ 0.19
SOX2P48431 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX2P48431 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC16.26■□□□□ 0.19
SOX2P48431 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC16.26■□□□□ 0.19
SOX2P48431 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.26■□□□□ 0.19
SOX2P48431 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SOX2P48431 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC16.26■□□□□ 0.19
SOX2P48431 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC16.26■□□□□ 0.19
SOX2P48431 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX2P48431 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX2P48431 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX2P48431 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX2P48431 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX2P48431 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC16.26■□□□□ 0.19
SOX2P48431 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC16.26■□□□□ 0.19
SOX2P48431 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC16.26■□□□□ 0.19
SOX2P48431 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC16.26■□□□□ 0.19
SOX2P48431 AC008403.3-201ENST00000598924 454 ntBASIC16.26■□□□□ 0.19
SOX2P48431 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC16.26■□□□□ 0.19
SOX2P48431 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.26■□□□□ 0.19
SOX2P48431 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX2P48431 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX2P48431 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX2P48431 AC093677.2-201ENST00000600169 1863 ntBASIC16.26■□□□□ 0.19
SOX2P48431 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
SOX2P48431 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC16.26■□□□□ 0.19
SOX2P48431 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX2P48431 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SOX2P48431 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX2P48431 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX2P48431 REXO1L9P-201ENST00000604264 2108 ntBASIC16.25■□□□□ 0.19
SOX2P48431 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX2P48431 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC16.25■□□□□ 0.19
SOX2P48431 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.25■□□□□ 0.19
SOX2P48431 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SOX2P48431 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX2P48431 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
SOX2P48431 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX2P48431 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX2P48431 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX2P48431 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC16.25■□□□□ 0.19
SOX2P48431 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX2P48431 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX2P48431 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC16.25■□□□□ 0.19
SOX2P48431 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC16.25■□□□□ 0.19
SOX2P48431 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SOX2P48431 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC16.25■□□□□ 0.19
SOX2P48431 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC16.25■□□□□ 0.19
SOX2P48431 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC16.25■□□□□ 0.19
SOX2P48431 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC16.25■□□□□ 0.19
SOX2P48431 MTDHP1-201ENST00000605323 784 ntBASIC16.25■□□□□ 0.19
SOX2P48431 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX2P48431 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX2P48431 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX2P48431 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX2P48431 KRT8P3-201ENST00000519669 1449 ntBASIC16.25■□□□□ 0.19
SOX2P48431 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX2P48431 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX2P48431 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SOX2P48431 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX2P48431 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX2P48431 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX2P48431 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
SOX2P48431 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SOX2P48431 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
SOX2P48431 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SOX2P48431 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SOX2P48431 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC16.24■□□□□ 0.19
SOX2P48431 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC16.24■□□□□ 0.19
SOX2P48431 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
SOX2P48431 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms