Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
TOP3BO95985 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TOP3BO95985 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
TOP3BO95985 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TOP3BO95985 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TOP3BO95985 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TOP3BO95985 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.91■□□□□ 0.62
TOP3BO95985 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.91■□□□□ 0.62
TOP3BO95985 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
TOP3BO95985 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.91■□□□□ 0.62
TOP3BO95985 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.9■□□□□ 0.62
TOP3BO95985 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
TOP3BO95985 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
TOP3BO95985 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TOP3BO95985 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
TOP3BO95985 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.9■□□□□ 0.62
TOP3BO95985 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TOP3BO95985 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
TOP3BO95985 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
TOP3BO95985 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TOP3BO95985 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TOP3BO95985 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TOP3BO95985 AC007663.1-201ENST00000438948 1240 ntBASIC18.9■□□□□ 0.62
TOP3BO95985 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TOP3BO95985 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TOP3BO95985 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TOP3BO95985 AP000692.2-201ENST00000608391 879 ntBASIC18.9■□□□□ 0.62
TOP3BO95985 AC023511.2-201ENST00000618803 211 ntBASIC18.9■□□□□ 0.62
TOP3BO95985 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC18.9■□□□□ 0.62
TOP3BO95985 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
TOP3BO95985 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TOP3BO95985 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TOP3BO95985 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
TOP3BO95985 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.9■□□□□ 0.62
TOP3BO95985 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC18.9■□□□□ 0.62
TOP3BO95985 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.9■□□□□ 0.62
TOP3BO95985 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
TOP3BO95985 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.89■□□□□ 0.62
TOP3BO95985 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.89■□□□□ 0.62
TOP3BO95985 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.89■□□□□ 0.62
TOP3BO95985 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
TOP3BO95985 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
TOP3BO95985 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
TOP3BO95985 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.62
TOP3BO95985 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
TOP3BO95985 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TOP3BO95985 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TOP3BO95985 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
TOP3BO95985 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.61
TOP3BO95985 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TOP3BO95985 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.89■□□□□ 0.61
TOP3BO95985 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
TOP3BO95985 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TOP3BO95985 HOMER2P1-201ENST00000455653 964 ntBASIC18.89■□□□□ 0.61
TOP3BO95985 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.89■□□□□ 0.61
TOP3BO95985 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.89■□□□□ 0.61
TOP3BO95985 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.89■□□□□ 0.61
TOP3BO95985 RN7SL510P-201ENST00000581311 263 ntBASIC18.89■□□□□ 0.61
TOP3BO95985 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
TOP3BO95985 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
TOP3BO95985 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TOP3BO95985 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
TOP3BO95985 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TOP3BO95985 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.89■□□□□ 0.61
TOP3BO95985 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TOP3BO95985 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.89■□□□□ 0.61
TOP3BO95985 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.89■□□□□ 0.61
TOP3BO95985 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
TOP3BO95985 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
TOP3BO95985 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
TOP3BO95985 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
TOP3BO95985 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TOP3BO95985 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
TOP3BO95985 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.88■□□□□ 0.61
TOP3BO95985 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TOP3BO95985 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TOP3BO95985 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TOP3BO95985 AC126763.1-201ENST00000552015 2118 ntBASIC18.88■□□□□ 0.61
TOP3BO95985 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
TOP3BO95985 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
TOP3BO95985 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TOP3BO95985 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
TOP3BO95985 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC18.88■□□□□ 0.61
TOP3BO95985 MFAP1P1-201ENST00000442257 1255 ntBASIC18.88■□□□□ 0.61
TOP3BO95985 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC18.88■□□□□ 0.61
TOP3BO95985 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
TOP3BO95985 AC083906.6-201ENST00000641366 219 ntBASIC18.88■□□□□ 0.61
TOP3BO95985 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TOP3BO95985 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
TOP3BO95985 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TOP3BO95985 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC18.88■□□□□ 0.61
TOP3BO95985 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
TOP3BO95985 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
TOP3BO95985 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TOP3BO95985 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.88■□□□□ 0.61
TOP3BO95985 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TOP3BO95985 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TOP3BO95985 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TOP3BO95985 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TOP3BO95985 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms