Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
MSH5O43196 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC25.06■■□□□ 1.6
MSH5O43196 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC25.06■■□□□ 1.6
MSH5O43196 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC25.06■■□□□ 1.6
MSH5O43196 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC25.06■■□□□ 1.6
MSH5O43196 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
MSH5O43196 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC25.06■■□□□ 1.6
MSH5O43196 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
MSH5O43196 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
MSH5O43196 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC25.06■■□□□ 1.6
MSH5O43196 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
MSH5O43196 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC25.06■■□□□ 1.6
MSH5O43196 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
MSH5O43196 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC25.06■■□□□ 1.6
MSH5O43196 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC25.06■■□□□ 1.6
MSH5O43196 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
MSH5O43196 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
MSH5O43196 KCNIP4-204ENST00000382150 1645 ntAPPRIS P3 TSL 1 (best) BASIC25.05■■□□□ 1.6
MSH5O43196 KRT8P17-201ENST00000453110 1448 ntBASIC25.05■■□□□ 1.6
MSH5O43196 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC25.05■■□□□ 1.6
MSH5O43196 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC25.05■■□□□ 1.6
MSH5O43196 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
MSH5O43196 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
MSH5O43196 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
MSH5O43196 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC25.05■■□□□ 1.6
MSH5O43196 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC25.05■■□□□ 1.6
MSH5O43196 AC018362.2-202ENST00000567089 562 ntTSL 3 BASIC25.05■■□□□ 1.6
MSH5O43196 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC25.05■■□□□ 1.6
MSH5O43196 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
MSH5O43196 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
MSH5O43196 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
MSH5O43196 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
MSH5O43196 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
MSH5O43196 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
MSH5O43196 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
MSH5O43196 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC25.05■■□□□ 1.6
MSH5O43196 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
MSH5O43196 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
MSH5O43196 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC25.04■■□□□ 1.6
MSH5O43196 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC25.04■■□□□ 1.6
MSH5O43196 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC25.04■■□□□ 1.6
MSH5O43196 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
MSH5O43196 AC009113.1-201ENST00000570267 2443 ntBASIC25.04■■□□□ 1.6
MSH5O43196 AC099398.1-201ENST00000567919 2776 ntBASIC25.04■■□□□ 1.6
MSH5O43196 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC25.04■■□□□ 1.6
MSH5O43196 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
MSH5O43196 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
MSH5O43196 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
MSH5O43196 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC25.04■■□□□ 1.6
MSH5O43196 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
MSH5O43196 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
MSH5O43196 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
MSH5O43196 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
MSH5O43196 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC25.04■■□□□ 1.6
MSH5O43196 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC25.04■■□□□ 1.6
MSH5O43196 AC026407.1-201ENST00000518369 204 ntBASIC25.04■■□□□ 1.6
MSH5O43196 AC090152.1-202ENST00000518993 1079 ntTSL 3 BASIC25.04■■□□□ 1.6
MSH5O43196 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
MSH5O43196 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC25.04■■□□□ 1.6
MSH5O43196 AC010653.2-201ENST00000623505 997 ntBASIC25.04■■□□□ 1.6
MSH5O43196 AL023973.1-201ENST00000624619 620 ntBASIC25.04■■□□□ 1.6
MSH5O43196 AL031432.5-201ENST00000641059 760 ntBASIC25.04■■□□□ 1.6
MSH5O43196 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC25.04■■□□□ 1.6
MSH5O43196 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
MSH5O43196 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC25.04■■□□□ 1.6
MSH5O43196 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
MSH5O43196 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
MSH5O43196 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
MSH5O43196 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
MSH5O43196 AC139713.2-201ENST00000641328 2723 ntBASIC25.03■■□□□ 1.6
MSH5O43196 AIRN-201ENST00000601203 4374 ntBASIC25.03■■□□□ 1.6
MSH5O43196 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC25.03■■□□□ 1.6
MSH5O43196 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC25.03■■□□□ 1.6
MSH5O43196 LINC01821-202ENST00000438505 882 ntTSL 4 BASIC25.03■■□□□ 1.6
MSH5O43196 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
MSH5O43196 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC25.03■■□□□ 1.6
MSH5O43196 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC25.03■■□□□ 1.6
MSH5O43196 IRF5-214ENST00000613821 595 ntTSL 5 BASIC25.03■■□□□ 1.6
MSH5O43196 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC25.03■■□□□ 1.6
MSH5O43196 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC25.03■■□□□ 1.6
MSH5O43196 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
MSH5O43196 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.6
MSH5O43196 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
MSH5O43196 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
MSH5O43196 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
MSH5O43196 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
MSH5O43196 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
MSH5O43196 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC25.03■■□□□ 1.6
MSH5O43196 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
MSH5O43196 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
MSH5O43196 AIRN-202ENST00000609176 1489 ntTSL 5 BASIC25.02■■□□□ 1.6
MSH5O43196 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
MSH5O43196 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
MSH5O43196 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC25.02■■□□□ 1.6
MSH5O43196 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
MSH5O43196 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
MSH5O43196 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
MSH5O43196 PYM1-202ENST00000398213 1073 ntAPPRIS P1 TSL 2 BASIC25.02■■□□□ 1.6
MSH5O43196 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC25.02■■□□□ 1.6
MSH5O43196 USP9YP14-201ENST00000430663 563 ntBASIC25.02■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms