Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 AC099778.1-201ENST00000568593 1911 ntBASIC31.44■■■□□ 2.62
CUX2O14529 GABARAPL3-202ENST00000624044 1851 ntBASIC31.44■■■□□ 2.62
CUX2O14529 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
CUX2O14529 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC31.43■■■□□ 2.62
CUX2O14529 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC31.43■■■□□ 2.62
CUX2O14529 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
CUX2O14529 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
CUX2O14529 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC31.43■■■□□ 2.62
CUX2O14529 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC31.43■■■□□ 2.62
CUX2O14529 ELP6-205ENST00000439305 880 ntTSL 2 BASIC31.43■■■□□ 2.62
CUX2O14529 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC31.43■■■□□ 2.62
CUX2O14529 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC31.43■■■□□ 2.62
CUX2O14529 AL390955.2-201ENST00000603032 514 ntBASIC31.43■■■□□ 2.62
CUX2O14529 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC31.43■■■□□ 2.62
CUX2O14529 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
CUX2O14529 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC31.43■■■□□ 2.62
CUX2O14529 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC31.42■■■□□ 2.62
CUX2O14529 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
CUX2O14529 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC31.42■■■□□ 2.62
CUX2O14529 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC31.42■■■□□ 2.62
CUX2O14529 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC31.42■■■□□ 2.62
CUX2O14529 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC31.42■■■□□ 2.62
CUX2O14529 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
CUX2O14529 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
CUX2O14529 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC31.42■■■□□ 2.62
CUX2O14529 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC31.42■■■□□ 2.62
CUX2O14529 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC31.41■■■□□ 2.62
CUX2O14529 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC31.41■■■□□ 2.62
CUX2O14529 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC31.41■■■□□ 2.62
CUX2O14529 PON3-205ENST00000451904 1053 ntTSL 3 BASIC31.41■■■□□ 2.62
CUX2O14529 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC31.41■■■□□ 2.62
CUX2O14529 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CUX2O14529 NOP2-220ENST00000545915 630 ntTSL 2 BASIC31.41■■■□□ 2.62
CUX2O14529 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC31.41■■■□□ 2.62
CUX2O14529 AL031432.2-201ENST00000566714 459 ntBASIC31.41■■■□□ 2.62
CUX2O14529 AL928711.1-201ENST00000570165 459 ntBASIC31.41■■■□□ 2.62
CUX2O14529 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC31.41■■■□□ 2.62
CUX2O14529 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
CUX2O14529 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CUX2O14529 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC31.41■■■□□ 2.62
CUX2O14529 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC31.41■■■□□ 2.62
CUX2O14529 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CUX2O14529 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC31.41■■■□□ 2.62
CUX2O14529 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC31.41■■■□□ 2.62
CUX2O14529 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC31.4■■■□□ 2.62
CUX2O14529 EDF1-203ENST00000371649 790 ntTSL 2 BASIC31.4■■■□□ 2.62
CUX2O14529 MRPL20P1-201ENST00000400819 433 ntBASIC31.4■■■□□ 2.62
CUX2O14529 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
CUX2O14529 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC31.4■■■□□ 2.62
CUX2O14529 PGM5P2-202ENST00000637225 1043 ntBASIC31.4■■■□□ 2.62
CUX2O14529 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
CUX2O14529 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC31.4■■■□□ 2.62
CUX2O14529 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC31.4■■■□□ 2.62
CUX2O14529 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
CUX2O14529 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC31.4■■■□□ 2.62
CUX2O14529 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC31.4■■■□□ 2.62
CUX2O14529 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC31.4■■■□□ 2.62
CUX2O14529 TCF3P1-201ENST00000423021 1937 ntBASIC31.4■■■□□ 2.62
CUX2O14529 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC31.4■■■□□ 2.62
CUX2O14529 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
CUX2O14529 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC31.4■■■□□ 2.62
CUX2O14529 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC31.4■■■□□ 2.62
CUX2O14529 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC31.4■■■□□ 2.62
CUX2O14529 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC31.4■■■□□ 2.62
CUX2O14529 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC31.4■■■□□ 2.62
CUX2O14529 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC31.4■■■□□ 2.62
CUX2O14529 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC31.4■■■□□ 2.62
CUX2O14529 TCAP-202ENST00000578283 583 ntTSL 5 BASIC31.4■■■□□ 2.62
CUX2O14529 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC31.4■■■□□ 2.62
CUX2O14529 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC31.39■■■□□ 2.62
CUX2O14529 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC31.39■■■□□ 2.62
CUX2O14529 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
CUX2O14529 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC31.39■■■□□ 2.62
CUX2O14529 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC31.39■■■□□ 2.62
CUX2O14529 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC31.39■■■□□ 2.62
CUX2O14529 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC31.39■■■□□ 2.62
CUX2O14529 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
CUX2O14529 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC31.39■■■□□ 2.62
CUX2O14529 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC31.39■■■□□ 2.62
CUX2O14529 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC31.39■■■□□ 2.62
CUX2O14529 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC31.39■■■□□ 2.62
CUX2O14529 DUT-210ENST00000559935 569 ntTSL 3 BASIC31.39■■■□□ 2.62
CUX2O14529 AL138831.2-201ENST00000606564 490 ntBASIC31.39■■■□□ 2.62
CUX2O14529 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC31.39■■■□□ 2.62
CUX2O14529 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC31.38■■■□□ 2.61
CUX2O14529 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
CUX2O14529 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
CUX2O14529 AC008556.1-201ENST00000610908 2040 ntBASIC31.38■■■□□ 2.61
CUX2O14529 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
CUX2O14529 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC31.38■■■□□ 2.61
CUX2O14529 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
CUX2O14529 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC31.38■■■□□ 2.61
CUX2O14529 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC31.38■■■□□ 2.61
CUX2O14529 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC31.38■■■□□ 2.61
CUX2O14529 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC31.38■■■□□ 2.61
CUX2O14529 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC31.38■■■□□ 2.61
CUX2O14529 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC31.38■■■□□ 2.61
CUX2O14529 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC31.38■■■□□ 2.61
CUX2O14529 TERF1P3-201ENST00000505638 1227 ntBASIC31.38■■■□□ 2.61
CUX2O14529 CCND1-203ENST00000536559 553 ntTSL 3 BASIC31.38■■■□□ 2.61
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms