Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A5A8TX70 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A5A8TX70 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A5A8TX70 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC14.25□□□□□ -0.13
COL6A5A8TX70 GAS2L1P1-201ENST00000420145 1480 ntBASIC14.25□□□□□ -0.13
COL6A5A8TX70 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A5A8TX70 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC14.25□□□□□ -0.13
COL6A5A8TX70 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC14.25□□□□□ -0.13
COL6A5A8TX70 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
COL6A5A8TX70 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC14.25□□□□□ -0.13
COL6A5A8TX70 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A5A8TX70 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A5A8TX70 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A5A8TX70 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC14.25□□□□□ -0.13
COL6A5A8TX70 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A5A8TX70 CTNS-203ENST00000399306 803 ntTSL 3 BASIC14.25□□□□□ -0.13
COL6A5A8TX70 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC14.25□□□□□ -0.13
COL6A5A8TX70 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A5A8TX70 AC011467.2-201ENST00000598425 242 ntBASIC14.25□□□□□ -0.13
COL6A5A8TX70 MED29-202ENST00000594368 1471 ntTSL 2 BASIC14.25□□□□□ -0.13
COL6A5A8TX70 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC14.25□□□□□ -0.13
COL6A5A8TX70 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A5A8TX70 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
COL6A5A8TX70 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL6A5A8TX70 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL6A5A8TX70 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL6A5A8TX70 AC009237.14-201ENST00000609975 1594 ntBASIC14.24□□□□□ -0.13
COL6A5A8TX70 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL6A5A8TX70 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL6A5A8TX70 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL6A5A8TX70 INGX-202ENST00000489074 768 ntBASIC14.24□□□□□ -0.13
COL6A5A8TX70 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC14.24□□□□□ -0.13
COL6A5A8TX70 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC14.24□□□□□ -0.13
COL6A5A8TX70 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL6A5A8TX70 AC025048.6-201ENST00000634326 1161 ntBASIC14.24□□□□□ -0.13
COL6A5A8TX70 AP000867.4-201ENST00000641616 219 ntBASIC14.24□□□□□ -0.13
COL6A5A8TX70 AC092902.6-201ENST00000641783 218 ntBASIC14.24□□□□□ -0.13
COL6A5A8TX70 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
COL6A5A8TX70 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC14.24□□□□□ -0.13
COL6A5A8TX70 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL6A5A8TX70 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC14.24□□□□□ -0.13
COL6A5A8TX70 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL6A5A8TX70 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL6A5A8TX70 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC14.24□□□□□ -0.13
COL6A5A8TX70 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC14.24□□□□□ -0.13
COL6A5A8TX70 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC14.24□□□□□ -0.13
COL6A5A8TX70 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL6A5A8TX70 AC073621.1-201ENST00000392730 636 ntBASIC14.24□□□□□ -0.13
COL6A5A8TX70 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC14.24□□□□□ -0.13
COL6A5A8TX70 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC14.24□□□□□ -0.13
COL6A5A8TX70 AC006557.2-201ENST00000592985 1240 ntBASIC14.24□□□□□ -0.13
COL6A5A8TX70 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC14.24□□□□□ -0.13
COL6A5A8TX70 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC14.24□□□□□ -0.13
COL6A5A8TX70 LINC01521-201ENST00000504184 1943 ntBASIC14.24□□□□□ -0.13
COL6A5A8TX70 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC14.24□□□□□ -0.13
COL6A5A8TX70 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC14.23□□□□□ -0.13
COL6A5A8TX70 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
COL6A5A8TX70 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
COL6A5A8TX70 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A5A8TX70 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
COL6A5A8TX70 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A5A8TX70 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A5A8TX70 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC14.23□□□□□ -0.13
COL6A5A8TX70 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC14.23□□□□□ -0.13
COL6A5A8TX70 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A5A8TX70 NEK7-201ENST00000367383 586 ntTSL 2 BASIC14.23□□□□□ -0.13
COL6A5A8TX70 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC14.23□□□□□ -0.13
COL6A5A8TX70 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC14.23□□□□□ -0.13
COL6A5A8TX70 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC14.23□□□□□ -0.13
COL6A5A8TX70 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
COL6A5A8TX70 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
COL6A5A8TX70 AC027307.3-201ENST00000594262 1100 ntBASIC14.23□□□□□ -0.13
COL6A5A8TX70 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
COL6A5A8TX70 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC14.23□□□□□ -0.13
COL6A5A8TX70 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A5A8TX70 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A5A8TX70 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
COL6A5A8TX70 CYP51A1P1-201ENST00000492267 1507 ntBASIC14.23□□□□□ -0.13
COL6A5A8TX70 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
COL6A5A8TX70 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC14.23□□□□□ -0.13
COL6A5A8TX70 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A5A8TX70 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A5A8TX70 CBR1-202ENST00000399191 838 ntTSL 3 BASIC14.23□□□□□ -0.13
COL6A5A8TX70 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC14.23□□□□□ -0.13
COL6A5A8TX70 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC14.23□□□□□ -0.13
COL6A5A8TX70 COQ6-210ENST00000554920 649 ntTSL 3 BASIC14.23□□□□□ -0.13
COL6A5A8TX70 RNF151-202ENST00000569210 853 ntTSL 2 BASIC14.23□□□□□ -0.13
COL6A5A8TX70 AL390955.2-201ENST00000603032 514 ntBASIC14.23□□□□□ -0.13
COL6A5A8TX70 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC14.23□□□□□ -0.13
COL6A5A8TX70 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A5A8TX70 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A5A8TX70 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
COL6A5A8TX70 NME2P1-201ENST00000426182 414 ntBASIC14.22□□□□□ -0.13
COL6A5A8TX70 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC14.22□□□□□ -0.13
COL6A5A8TX70 ELP6-205ENST00000439305 880 ntTSL 2 BASIC14.22□□□□□ -0.13
COL6A5A8TX70 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A5A8TX70 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC14.22□□□□□ -0.13
COL6A5A8TX70 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC14.22□□□□□ -0.13
COL6A5A8TX70 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A5A8TX70 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms