Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 TEX21P-204ENST00000641479 1693 ntBASIC16.92■□□□□ 0.3
DDX28Q9NUL7 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 AP003097.1-201ENST00000530657 1135 ntBASIC16.92■□□□□ 0.3
DDX28Q9NUL7 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 AL161938.1-201ENST00000569833 2180 ntBASIC16.91■□□□□ 0.3
DDX28Q9NUL7 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 PRKY-204ENST00000533551 1019 ntBASIC16.91■□□□□ 0.3
DDX28Q9NUL7 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
DDX28Q9NUL7 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 AC084018.2-201ENST00000613093 2607 ntBASIC16.9■□□□□ 0.3
DDX28Q9NUL7 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 THEM4-205ENST00000489410 643 ntTSL 2 BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms