Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
MMP28Q9H239 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
MMP28Q9H239 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
MMP28Q9H239 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.31■□□□□ 0.2
MMP28Q9H239 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
MMP28Q9H239 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.31■□□□□ 0.2
MMP28Q9H239 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC16.31■□□□□ 0.2
MMP28Q9H239 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MMP28Q9H239 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MMP28Q9H239 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MMP28Q9H239 COBL-210ENST00000632460 1941 ntTSL 5 BASIC16.31■□□□□ 0.2
MMP28Q9H239 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC16.31■□□□□ 0.2
MMP28Q9H239 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
MMP28Q9H239 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MMP28Q9H239 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
MMP28Q9H239 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
MMP28Q9H239 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MMP28Q9H239 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
MMP28Q9H239 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC16.31■□□□□ 0.2
MMP28Q9H239 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MMP28Q9H239 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MMP28Q9H239 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
MMP28Q9H239 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MMP28Q9H239 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
MMP28Q9H239 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
MMP28Q9H239 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
MMP28Q9H239 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC16.31■□□□□ 0.2
MMP28Q9H239 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MMP28Q9H239 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
MMP28Q9H239 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
MMP28Q9H239 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC16.31■□□□□ 0.2
MMP28Q9H239 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
MMP28Q9H239 RNA5SP413-201ENST00000516373 109 ntBASIC16.31■□□□□ 0.2
MMP28Q9H239 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
MMP28Q9H239 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.31■□□□□ 0.2
MMP28Q9H239 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
MMP28Q9H239 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.31■□□□□ 0.2
MMP28Q9H239 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.31■□□□□ 0.2
MMP28Q9H239 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
MMP28Q9H239 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.31■□□□□ 0.2
MMP28Q9H239 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
MMP28Q9H239 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
MMP28Q9H239 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MMP28Q9H239 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
MMP28Q9H239 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MMP28Q9H239 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MMP28Q9H239 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
MMP28Q9H239 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC16.31■□□□□ 0.2
MMP28Q9H239 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
MMP28Q9H239 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.3■□□□□ 0.2
MMP28Q9H239 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
MMP28Q9H239 MOK-233ENST00000524214 1539 ntTSL 2 BASIC16.3■□□□□ 0.2
MMP28Q9H239 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
MMP28Q9H239 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
MMP28Q9H239 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MMP28Q9H239 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MMP28Q9H239 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MMP28Q9H239 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MMP28Q9H239 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
MMP28Q9H239 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MMP28Q9H239 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MMP28Q9H239 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MMP28Q9H239 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
MMP28Q9H239 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
MMP28Q9H239 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
MMP28Q9H239 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
MMP28Q9H239 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC16.3■□□□□ 0.2
MMP28Q9H239 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC16.3■□□□□ 0.2
MMP28Q9H239 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC16.3■□□□□ 0.2
MMP28Q9H239 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MMP28Q9H239 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
MMP28Q9H239 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
MMP28Q9H239 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.3■□□□□ 0.2
MMP28Q9H239 AL118508.1-201ENST00000613502 2345 ntBASIC16.3■□□□□ 0.2
MMP28Q9H239 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC16.3■□□□□ 0.2
MMP28Q9H239 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
MMP28Q9H239 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.3■□□□□ 0.2
MMP28Q9H239 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
MMP28Q9H239 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
MMP28Q9H239 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.29■□□□□ 0.2
MMP28Q9H239 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.29■□□□□ 0.2
MMP28Q9H239 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
MMP28Q9H239 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
MMP28Q9H239 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC16.29■□□□□ 0.2
MMP28Q9H239 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MMP28Q9H239 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MMP28Q9H239 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
MMP28Q9H239 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MMP28Q9H239 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC16.29■□□□□ 0.2
MMP28Q9H239 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MMP28Q9H239 AL390719.1-204ENST00000412397 1219 ntBASIC16.29■□□□□ 0.2
MMP28Q9H239 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
MMP28Q9H239 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC16.29■□□□□ 0.2
MMP28Q9H239 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
MMP28Q9H239 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
MMP28Q9H239 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MMP28Q9H239 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.29■□□□□ 0.2
MMP28Q9H239 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC16.29■□□□□ 0.2
MMP28Q9H239 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
MMP28Q9H239 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms