Protein–RNA interactions for Protein: Q9GZT3

SLIRP, SRA stem-loop-interacting RNA-binding protein, mitochondrial, humanhuman

Known RBP Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRPQ9GZT3 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SLIRPQ9GZT3 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SLIRPQ9GZT3 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SLIRPQ9GZT3 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SLIRPQ9GZT3 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
SLIRPQ9GZT3 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SLIRPQ9GZT3 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SLIRPQ9GZT3 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SLIRPQ9GZT3 FLJ38576-201ENST00000623820 2459 ntBASIC16.27■□□□□ 0.2
SLIRPQ9GZT3 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SLIRPQ9GZT3 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SLIRPQ9GZT3 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SLIRPQ9GZT3 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SLIRPQ9GZT3 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.27■□□□□ 0.2
SLIRPQ9GZT3 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.27■□□□□ 0.2
SLIRPQ9GZT3 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.27■□□□□ 0.2
SLIRPQ9GZT3 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SLIRPQ9GZT3 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC16.27■□□□□ 0.2
SLIRPQ9GZT3 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SLIRPQ9GZT3 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
SLIRPQ9GZT3 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
SLIRPQ9GZT3 BMP1-204ENST00000397814 836 ntTSL 4 BASIC16.27■□□□□ 0.2
SLIRPQ9GZT3 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SLIRPQ9GZT3 SERP1-205ENST00000487153 657 ntTSL 4 BASIC16.27■□□□□ 0.2
SLIRPQ9GZT3 HES2-205ENST00000487437 968 ntTSL 3 BASIC16.27■□□□□ 0.2
SLIRPQ9GZT3 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC16.27■□□□□ 0.2
SLIRPQ9GZT3 AC106739.1-201ENST00000617035 715 ntBASIC16.27■□□□□ 0.2
SLIRPQ9GZT3 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
SLIRPQ9GZT3 AC013268.1-206ENST00000638368 961 ntBASIC16.27■□□□□ 0.2
SLIRPQ9GZT3 AC112229.1-201ENST00000639295 961 ntBASIC16.27■□□□□ 0.2
SLIRPQ9GZT3 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
SLIRPQ9GZT3 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SLIRPQ9GZT3 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
SLIRPQ9GZT3 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SLIRPQ9GZT3 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
SLIRPQ9GZT3 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
SLIRPQ9GZT3 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.27■□□□□ 0.19
SLIRPQ9GZT3 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
SLIRPQ9GZT3 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
SLIRPQ9GZT3 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
SLIRPQ9GZT3 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.27■□□□□ 0.19
SLIRPQ9GZT3 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
SLIRPQ9GZT3 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SLIRPQ9GZT3 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.27■□□□□ 0.19
SLIRPQ9GZT3 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SLIRPQ9GZT3 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
SLIRPQ9GZT3 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
SLIRPQ9GZT3 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SLIRPQ9GZT3 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SLIRPQ9GZT3 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SLIRPQ9GZT3 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
SLIRPQ9GZT3 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SLIRPQ9GZT3 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SLIRPQ9GZT3 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SLIRPQ9GZT3 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC16.26■□□□□ 0.19
SLIRPQ9GZT3 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SLIRPQ9GZT3 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SLIRPQ9GZT3 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
SLIRPQ9GZT3 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SLIRPQ9GZT3 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC16.26■□□□□ 0.19
SLIRPQ9GZT3 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SLIRPQ9GZT3 RHOF-204ENST00000537265 699 ntTSL 2 BASIC16.26■□□□□ 0.19
SLIRPQ9GZT3 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SLIRPQ9GZT3 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC16.26■□□□□ 0.19
SLIRPQ9GZT3 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SLIRPQ9GZT3 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
SLIRPQ9GZT3 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.26■□□□□ 0.19
SLIRPQ9GZT3 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
SLIRPQ9GZT3 AL357033.4-201ENST00000617703 1807 ntBASIC16.26■□□□□ 0.19
SLIRPQ9GZT3 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SLIRPQ9GZT3 CROCCP2-202ENST00000412962 2773 ntBASIC16.26■□□□□ 0.19
SLIRPQ9GZT3 MST1L-201ENST00000442552 2185 ntBASIC16.26■□□□□ 0.19
SLIRPQ9GZT3 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SLIRPQ9GZT3 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SLIRPQ9GZT3 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SLIRPQ9GZT3 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.25■□□□□ 0.19
SLIRPQ9GZT3 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.25■□□□□ 0.19
SLIRPQ9GZT3 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SLIRPQ9GZT3 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SLIRPQ9GZT3 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SLIRPQ9GZT3 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SLIRPQ9GZT3 KATNBL1P6-202ENST00000562413 1466 ntBASIC16.25■□□□□ 0.19
SLIRPQ9GZT3 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SLIRPQ9GZT3 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SLIRPQ9GZT3 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
SLIRPQ9GZT3 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SLIRPQ9GZT3 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC16.25■□□□□ 0.19
SLIRPQ9GZT3 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SLIRPQ9GZT3 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
SLIRPQ9GZT3 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SLIRPQ9GZT3 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SLIRPQ9GZT3 AL355472.2-201ENST00000422958 438 ntBASIC16.25■□□□□ 0.19
SLIRPQ9GZT3 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SLIRPQ9GZT3 BRI3-207ENST00000539286 699 ntTSL 2 BASIC16.25■□□□□ 0.19
SLIRPQ9GZT3 TRIR-205ENST00000592273 783 ntTSL 3 BASIC16.25■□□□□ 0.19
SLIRPQ9GZT3 PCDHA1-201ENST00000378133 2726 ntBASIC16.25■□□□□ 0.19
SLIRPQ9GZT3 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.25■□□□□ 0.19
SLIRPQ9GZT3 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.25■□□□□ 0.19
SLIRPQ9GZT3 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SLIRPQ9GZT3 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms