Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
TRAIPQ9BWF2 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAIPQ9BWF2 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAIPQ9BWF2 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAIPQ9BWF2 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAIPQ9BWF2 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAIPQ9BWF2 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAIPQ9BWF2 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRAIPQ9BWF2 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRAIPQ9BWF2 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAIPQ9BWF2 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
TRAIPQ9BWF2 AP002383.4-201ENST00000442518 975 ntBASIC20.21■□□□□ 0.83
TRAIPQ9BWF2 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC20.21■□□□□ 0.83
TRAIPQ9BWF2 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC20.21■□□□□ 0.83
TRAIPQ9BWF2 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAIPQ9BWF2 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC20.21■□□□□ 0.83
TRAIPQ9BWF2 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAIPQ9BWF2 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAIPQ9BWF2 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAIPQ9BWF2 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRAIPQ9BWF2 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAIPQ9BWF2 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.21■□□□□ 0.83
TRAIPQ9BWF2 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAIPQ9BWF2 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC20.21■□□□□ 0.83
TRAIPQ9BWF2 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRAIPQ9BWF2 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRAIPQ9BWF2 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRAIPQ9BWF2 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRAIPQ9BWF2 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRAIPQ9BWF2 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRAIPQ9BWF2 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRAIPQ9BWF2 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC20.2■□□□□ 0.82
TRAIPQ9BWF2 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC20.2■□□□□ 0.82
TRAIPQ9BWF2 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC20.2■□□□□ 0.82
TRAIPQ9BWF2 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC20.2■□□□□ 0.82
TRAIPQ9BWF2 LITAF-220ENST00000620789 692 ntTSL 5 BASIC20.2■□□□□ 0.82
TRAIPQ9BWF2 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRAIPQ9BWF2 CYP51A1P1-201ENST00000492267 1507 ntBASIC20.2■□□□□ 0.82
TRAIPQ9BWF2 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRAIPQ9BWF2 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC20.2■□□□□ 0.82
TRAIPQ9BWF2 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRAIPQ9BWF2 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
TRAIPQ9BWF2 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRAIPQ9BWF2 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC20.2■□□□□ 0.82
TRAIPQ9BWF2 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
TRAIPQ9BWF2 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
TRAIPQ9BWF2 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC20.2■□□□□ 0.82
TRAIPQ9BWF2 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
TRAIPQ9BWF2 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRAIPQ9BWF2 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC20.19■□□□□ 0.82
TRAIPQ9BWF2 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRAIPQ9BWF2 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRAIPQ9BWF2 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRAIPQ9BWF2 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
TRAIPQ9BWF2 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRAIPQ9BWF2 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRAIPQ9BWF2 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC20.19■□□□□ 0.82
TRAIPQ9BWF2 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
TRAIPQ9BWF2 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC20.19■□□□□ 0.82
TRAIPQ9BWF2 AC092329.2-201ENST00000598402 547 ntBASIC20.19■□□□□ 0.82
TRAIPQ9BWF2 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRAIPQ9BWF2 AC092119.3-201ENST00000612618 583 ntBASIC20.19■□□□□ 0.82
TRAIPQ9BWF2 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
TRAIPQ9BWF2 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC20.19■□□□□ 0.82
TRAIPQ9BWF2 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.19■□□□□ 0.82
TRAIPQ9BWF2 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
TRAIPQ9BWF2 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
TRAIPQ9BWF2 AC120498.9-201ENST00000339021 3867 ntBASIC20.19■□□□□ 0.82
TRAIPQ9BWF2 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRAIPQ9BWF2 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC20.18■□□□□ 0.82
TRAIPQ9BWF2 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAIPQ9BWF2 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.18■□□□□ 0.82
TRAIPQ9BWF2 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC20.18■□□□□ 0.82
TRAIPQ9BWF2 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRAIPQ9BWF2 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
TRAIPQ9BWF2 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC20.18■□□□□ 0.82
TRAIPQ9BWF2 BAALC-202ENST00000306391 243 ntTSL 5 BASIC20.18■□□□□ 0.82
TRAIPQ9BWF2 BAALC-204ENST00000330955 222 ntTSL 5 BASIC20.18■□□□□ 0.82
TRAIPQ9BWF2 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAIPQ9BWF2 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAIPQ9BWF2 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAIPQ9BWF2 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRAIPQ9BWF2 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC20.18■□□□□ 0.82
TRAIPQ9BWF2 CHCHD2P8-201ENST00000429873 447 ntBASIC20.18■□□□□ 0.82
TRAIPQ9BWF2 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC20.18■□□□□ 0.82
TRAIPQ9BWF2 KRT18P41-201ENST00000518924 1277 ntBASIC20.18■□□□□ 0.82
TRAIPQ9BWF2 NAT14-202ENST00000587400 416 ntTSL 5 BASIC20.18■□□□□ 0.82
TRAIPQ9BWF2 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
TRAIPQ9BWF2 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
TRAIPQ9BWF2 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRAIPQ9BWF2 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAIPQ9BWF2 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.18■□□□□ 0.82
TRAIPQ9BWF2 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRAIPQ9BWF2 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
TRAIPQ9BWF2 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAIPQ9BWF2 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms