Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 AC067852.2-201ENST00000590513 2313 ntBASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.87■□□□□ 0.61
TRIM56Q9BRZ2 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
TRIM56Q9BRZ2 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRIM56Q9BRZ2 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC18.87■□□□□ 0.61
TRIM56Q9BRZ2 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRIM56Q9BRZ2 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
TRIM56Q9BRZ2 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.87■□□□□ 0.61
TRIM56Q9BRZ2 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRIM56Q9BRZ2 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.87■□□□□ 0.61
TRIM56Q9BRZ2 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TRIM56Q9BRZ2 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TRIM56Q9BRZ2 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC18.87■□□□□ 0.61
TRIM56Q9BRZ2 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.87■□□□□ 0.61
TRIM56Q9BRZ2 AC068880.1-201ENST00000507289 2297 ntBASIC18.87■□□□□ 0.61
TRIM56Q9BRZ2 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
TRIM56Q9BRZ2 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
TRIM56Q9BRZ2 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
TRIM56Q9BRZ2 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.87■□□□□ 0.61
TRIM56Q9BRZ2 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRIM56Q9BRZ2 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC18.87■□□□□ 0.61
TRIM56Q9BRZ2 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRIM56Q9BRZ2 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRIM56Q9BRZ2 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 AL158047.1-201ENST00000445918 881 ntBASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
TRIM56Q9BRZ2 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRIM56Q9BRZ2 AC135776.1-201ENST00000319817 2481 ntBASIC18.85■□□□□ 0.61
TRIM56Q9BRZ2 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRIM56Q9BRZ2 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.85■□□□□ 0.61
TRIM56Q9BRZ2 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC18.85■□□□□ 0.61
TRIM56Q9BRZ2 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TRIM56Q9BRZ2 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRIM56Q9BRZ2 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRIM56Q9BRZ2 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRIM56Q9BRZ2 AC008556.1-201ENST00000610908 2040 ntBASIC18.85■□□□□ 0.61
TRIM56Q9BRZ2 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
TRIM56Q9BRZ2 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRIM56Q9BRZ2 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRIM56Q9BRZ2 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC18.85■□□□□ 0.61
TRIM56Q9BRZ2 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.85■□□□□ 0.61
TRIM56Q9BRZ2 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.85■□□□□ 0.61
TRIM56Q9BRZ2 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.85■□□□□ 0.61
TRIM56Q9BRZ2 CD177P1-201ENST00000606252 935 ntBASIC18.85■□□□□ 0.61
TRIM56Q9BRZ2 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
TRIM56Q9BRZ2 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TRIM56Q9BRZ2 PCDHB18P-201ENST00000524813 2368 ntBASIC18.85■□□□□ 0.61
TRIM56Q9BRZ2 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.85■□□□□ 0.61
TRIM56Q9BRZ2 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
TRIM56Q9BRZ2 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
TRIM56Q9BRZ2 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.85■□□□□ 0.61
TRIM56Q9BRZ2 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
TRIM56Q9BRZ2 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
TRIM56Q9BRZ2 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRIM56Q9BRZ2 ABALON-201ENST00000629058 1903 ntBASIC18.84■□□□□ 0.61
TRIM56Q9BRZ2 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.84■□□□□ 0.61
TRIM56Q9BRZ2 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms