Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
TIMP4Q99727 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TIMP4Q99727 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
TIMP4Q99727 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC16.95■□□□□ 0.3
TIMP4Q99727 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC16.95■□□□□ 0.3
TIMP4Q99727 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TIMP4Q99727 STX6-204ENST00000542060 4809 ntTSL 2 BASIC16.95■□□□□ 0.3
TIMP4Q99727 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TIMP4Q99727 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TIMP4Q99727 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC16.95■□□□□ 0.3
TIMP4Q99727 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC16.95■□□□□ 0.3
TIMP4Q99727 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TIMP4Q99727 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TIMP4Q99727 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC16.94■□□□□ 0.3
TIMP4Q99727 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TIMP4Q99727 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TIMP4Q99727 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TIMP4Q99727 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
TIMP4Q99727 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.94■□□□□ 0.3
TIMP4Q99727 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TIMP4Q99727 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TIMP4Q99727 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
TIMP4Q99727 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC16.94■□□□□ 0.3
TIMP4Q99727 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TIMP4Q99727 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TIMP4Q99727 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TIMP4Q99727 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.94■□□□□ 0.3
TIMP4Q99727 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TIMP4Q99727 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
TIMP4Q99727 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC16.94■□□□□ 0.3
TIMP4Q99727 ILF2-202ENST00000368681 726 ntTSL 2 BASIC16.94■□□□□ 0.3
TIMP4Q99727 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TIMP4Q99727 GAD2-202ENST00000376248 680 ntTSL 5 BASIC16.94■□□□□ 0.3
TIMP4Q99727 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TIMP4Q99727 AL031133.1-201ENST00000406807 723 ntBASIC16.94■□□□□ 0.3
TIMP4Q99727 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC16.94■□□□□ 0.3
TIMP4Q99727 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TIMP4Q99727 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TIMP4Q99727 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC16.94■□□□□ 0.3
TIMP4Q99727 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC16.94■□□□□ 0.3
TIMP4Q99727 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TIMP4Q99727 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC16.94■□□□□ 0.3
TIMP4Q99727 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TIMP4Q99727 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
TIMP4Q99727 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC16.94■□□□□ 0.3
TIMP4Q99727 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TIMP4Q99727 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TIMP4Q99727 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
TIMP4Q99727 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TIMP4Q99727 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
TIMP4Q99727 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TIMP4Q99727 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC16.94■□□□□ 0.3
TIMP4Q99727 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TIMP4Q99727 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
TIMP4Q99727 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
TIMP4Q99727 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TIMP4Q99727 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
TIMP4Q99727 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
TIMP4Q99727 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
TIMP4Q99727 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TIMP4Q99727 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TIMP4Q99727 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC16.93■□□□□ 0.3
TIMP4Q99727 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC16.93■□□□□ 0.3
TIMP4Q99727 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
TIMP4Q99727 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
TIMP4Q99727 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC16.93■□□□□ 0.3
TIMP4Q99727 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
TIMP4Q99727 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TIMP4Q99727 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
TIMP4Q99727 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
TIMP4Q99727 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC16.93■□□□□ 0.3
TIMP4Q99727 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TIMP4Q99727 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
TIMP4Q99727 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC16.93■□□□□ 0.3
TIMP4Q99727 MCCD1P1-208ENST00000445732 328 ntBASIC16.93■□□□□ 0.3
TIMP4Q99727 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC16.93■□□□□ 0.3
TIMP4Q99727 AL359075.1-203ENST00000462729 1002 ntBASIC16.93■□□□□ 0.3
TIMP4Q99727 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC16.93■□□□□ 0.3
TIMP4Q99727 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC16.93■□□□□ 0.3
TIMP4Q99727 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC16.93■□□□□ 0.3
TIMP4Q99727 GCSHP2-201ENST00000560971 527 ntBASIC16.93■□□□□ 0.3
TIMP4Q99727 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.93■□□□□ 0.3
TIMP4Q99727 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC16.93■□□□□ 0.3
TIMP4Q99727 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TIMP4Q99727 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
TIMP4Q99727 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
TIMP4Q99727 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC16.93■□□□□ 0.3
TIMP4Q99727 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TIMP4Q99727 AC083906.6-201ENST00000641366 219 ntBASIC16.93■□□□□ 0.3
TIMP4Q99727 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TIMP4Q99727 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TIMP4Q99727 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TIMP4Q99727 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TIMP4Q99727 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC16.93■□□□□ 0.3
TIMP4Q99727 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TIMP4Q99727 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC16.93■□□□□ 0.3
TIMP4Q99727 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TIMP4Q99727 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC16.93■□□□□ 0.3
TIMP4Q99727 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TIMP4Q99727 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms