Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDX2Q99626 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CDX2Q99626 CRYGEP-201ENST00000412192 528 ntBASIC19.25■□□□□ 0.67
CDX2Q99626 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC19.25■□□□□ 0.67
CDX2Q99626 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC19.25■□□□□ 0.67
CDX2Q99626 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC19.25■□□□□ 0.67
CDX2Q99626 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDX2Q99626 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CDX2Q99626 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CDX2Q99626 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC19.25■□□□□ 0.67
CDX2Q99626 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDX2Q99626 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC19.25■□□□□ 0.67
CDX2Q99626 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.25■□□□□ 0.67
CDX2Q99626 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CDX2Q99626 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CDX2Q99626 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDX2Q99626 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CDX2Q99626 KRT8P32-201ENST00000512863 1461 ntBASIC19.24■□□□□ 0.67
CDX2Q99626 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDX2Q99626 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CDX2Q99626 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDX2Q99626 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDX2Q99626 MRPL20P1-201ENST00000400819 433 ntBASIC19.24■□□□□ 0.67
CDX2Q99626 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC19.24■□□□□ 0.67
CDX2Q99626 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC19.24■□□□□ 0.67
CDX2Q99626 CCDC74BP1-201ENST00000508880 1123 ntBASIC19.24■□□□□ 0.67
CDX2Q99626 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC19.24■□□□□ 0.67
CDX2Q99626 AP000344.2-201ENST00000512987 629 ntBASIC19.24■□□□□ 0.67
CDX2Q99626 MAL2-202ENST00000531508 892 ntTSL 3 BASIC19.24■□□□□ 0.67
CDX2Q99626 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
CDX2Q99626 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDX2Q99626 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDX2Q99626 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDX2Q99626 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDX2Q99626 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CDX2Q99626 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.24■□□□□ 0.67
CDX2Q99626 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC19.24■□□□□ 0.67
CDX2Q99626 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDX2Q99626 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDX2Q99626 MED29-202ENST00000594368 1471 ntTSL 2 BASIC19.23■□□□□ 0.67
CDX2Q99626 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.23■□□□□ 0.67
CDX2Q99626 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDX2Q99626 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.23■□□□□ 0.67
CDX2Q99626 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CDX2Q99626 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDX2Q99626 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDX2Q99626 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDX2Q99626 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC19.23■□□□□ 0.67
CDX2Q99626 HLA-DRB6-201ENST00000411500 1235 ntBASIC19.23■□□□□ 0.67
CDX2Q99626 BX005266.1-201ENST00000473402 457 ntBASIC19.23■□□□□ 0.67
CDX2Q99626 AC113404.2-201ENST00000507884 177 ntBASIC19.23■□□□□ 0.67
CDX2Q99626 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC19.23■□□□□ 0.67
CDX2Q99626 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CDX2Q99626 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC19.23■□□□□ 0.67
CDX2Q99626 AC006557.2-201ENST00000592985 1240 ntBASIC19.23■□□□□ 0.67
CDX2Q99626 AJ011932.1-201ENST00000621707 465 ntBASIC19.23■□□□□ 0.67
CDX2Q99626 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC19.23■□□□□ 0.67
CDX2Q99626 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDX2Q99626 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC19.23■□□□□ 0.67
CDX2Q99626 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDX2Q99626 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC19.23■□□□□ 0.67
CDX2Q99626 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDX2Q99626 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDX2Q99626 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CDX2Q99626 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC19.23■□□□□ 0.67
CDX2Q99626 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC19.23■□□□□ 0.67
CDX2Q99626 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDX2Q99626 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC19.22■□□□□ 0.67
CDX2Q99626 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CDX2Q99626 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CDX2Q99626 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CDX2Q99626 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
CDX2Q99626 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.22■□□□□ 0.67
CDX2Q99626 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.22■□□□□ 0.67
CDX2Q99626 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CDX2Q99626 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CDX2Q99626 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CDX2Q99626 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CDX2Q99626 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CDX2Q99626 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
CDX2Q99626 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC19.22■□□□□ 0.67
CDX2Q99626 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CDX2Q99626 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC19.22■□□□□ 0.67
CDX2Q99626 SRP19-202ENST00000445150 833 ntTSL 2 BASIC19.22■□□□□ 0.67
CDX2Q99626 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC19.22■□□□□ 0.67
CDX2Q99626 AC136632.2-201ENST00000512891 861 ntBASIC19.22■□□□□ 0.67
CDX2Q99626 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CDX2Q99626 SDCCAG3P1-201ENST00000589292 1150 ntBASIC19.22■□□□□ 0.67
CDX2Q99626 TK1-204ENST00000590430 683 ntTSL 3 BASIC19.22■□□□□ 0.67
CDX2Q99626 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC19.22■□□□□ 0.67
CDX2Q99626 AQP6-205ENST00000618286 829 ntTSL 5 BASIC19.22■□□□□ 0.67
CDX2Q99626 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.22■□□□□ 0.67
CDX2Q99626 AL357033.4-201ENST00000617703 1807 ntBASIC19.22■□□□□ 0.67
CDX2Q99626 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC19.22■□□□□ 0.67
CDX2Q99626 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.22■□□□□ 0.67
CDX2Q99626 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CDX2Q99626 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CDX2Q99626 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
CDX2Q99626 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CDX2Q99626 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms