Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC17.42■□□□□ 0.38
PTCHD1Q96NR3 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD1Q96NR3 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD1Q96NR3 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD1Q96NR3 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.42■□□□□ 0.38
PTCHD1Q96NR3 ARMC10P1-201ENST00000313754 855 ntBASIC17.42■□□□□ 0.38
PTCHD1Q96NR3 GUK1-204ENST00000366721 689 ntTSL 3 BASIC17.42■□□□□ 0.38
PTCHD1Q96NR3 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD1Q96NR3 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.42■□□□□ 0.38
PTCHD1Q96NR3 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC17.42■□□□□ 0.38
PTCHD1Q96NR3 AC104390.1-201ENST00000555663 520 ntBASIC17.42■□□□□ 0.38
PTCHD1Q96NR3 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.42■□□□□ 0.38
PTCHD1Q96NR3 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.42■□□□□ 0.38
PTCHD1Q96NR3 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.42■□□□□ 0.38
PTCHD1Q96NR3 RMI2-205ENST00000576027 818 ntTSL 2 BASIC17.42■□□□□ 0.38
PTCHD1Q96NR3 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.42■□□□□ 0.38
PTCHD1Q96NR3 AL445228.2-201ENST00000605589 952 ntBASIC17.42■□□□□ 0.38
PTCHD1Q96NR3 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.42■□□□□ 0.38
PTCHD1Q96NR3 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD1Q96NR3 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD1Q96NR3 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD1Q96NR3 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD1Q96NR3 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD1Q96NR3 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD1Q96NR3 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD1Q96NR3 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD1Q96NR3 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD1Q96NR3 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.42■□□□□ 0.38
PTCHD1Q96NR3 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD1Q96NR3 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 STARP1-201ENST00000397973 869 ntBASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 AC087388.1-201ENST00000571370 1112 ntBASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTCHD1Q96NR3 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 SAPCD2P2-201ENST00000431719 1174 ntBASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 KRT18P38-201ENST00000449496 1282 ntBASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 RASA4DP-201ENST00000460726 1199 ntBASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PTCHD1Q96NR3 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
PTCHD1Q96NR3 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTCHD1Q96NR3 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.39■□□□□ 0.37
PTCHD1Q96NR3 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTCHD1Q96NR3 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTCHD1Q96NR3 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms