Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB4Q8WW32 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC18.51■□□□□ 0.55
HMGB4Q8WW32 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB4Q8WW32 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.51■□□□□ 0.55
HMGB4Q8WW32 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.51■□□□□ 0.55
HMGB4Q8WW32 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB4Q8WW32 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.51■□□□□ 0.55
HMGB4Q8WW32 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB4Q8WW32 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.51■□□□□ 0.55
HMGB4Q8WW32 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.5■□□□□ 0.55
HMGB4Q8WW32 KRT8P50-201ENST00000562022 1438 ntBASIC18.5■□□□□ 0.55
HMGB4Q8WW32 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB4Q8WW32 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB4Q8WW32 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
HMGB4Q8WW32 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB4Q8WW32 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB4Q8WW32 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB4Q8WW32 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB4Q8WW32 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB4Q8WW32 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC18.5■□□□□ 0.55
HMGB4Q8WW32 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC18.5■□□□□ 0.55
HMGB4Q8WW32 AC106795.1-205ENST00000512851 1056 ntBASIC18.5■□□□□ 0.55
HMGB4Q8WW32 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC18.5■□□□□ 0.55
HMGB4Q8WW32 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC18.5■□□□□ 0.55
HMGB4Q8WW32 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC18.5■□□□□ 0.55
HMGB4Q8WW32 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB4Q8WW32 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB4Q8WW32 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB4Q8WW32 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB4Q8WW32 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB4Q8WW32 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB4Q8WW32 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.5■□□□□ 0.55
HMGB4Q8WW32 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB4Q8WW32 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB4Q8WW32 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 AKR1C7P-201ENST00000305623 895 ntBASIC18.49■□□□□ 0.55
HMGB4Q8WW32 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 SAPCD2P3-201ENST00000455031 850 ntBASIC18.49■□□□□ 0.55
HMGB4Q8WW32 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB4Q8WW32 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB4Q8WW32 HEIH-201ENST00000623091 1652 ntBASIC18.48■□□□□ 0.55
HMGB4Q8WW32 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
HMGB4Q8WW32 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
HMGB4Q8WW32 KRT89P-201ENST00000620027 1478 ntBASIC18.48■□□□□ 0.55
HMGB4Q8WW32 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.48■□□□□ 0.55
HMGB4Q8WW32 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
HMGB4Q8WW32 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
HMGB4Q8WW32 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC18.48■□□□□ 0.55
HMGB4Q8WW32 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB4Q8WW32 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.48■□□□□ 0.55
HMGB4Q8WW32 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.48■□□□□ 0.55
HMGB4Q8WW32 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB4Q8WW32 CCNC-219ENST00000627680 896 ntTSL 5 BASIC18.48■□□□□ 0.55
HMGB4Q8WW32 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.48■□□□□ 0.55
HMGB4Q8WW32 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
HMGB4Q8WW32 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.48■□□□□ 0.55
HMGB4Q8WW32 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.48■□□□□ 0.55
HMGB4Q8WW32 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB4Q8WW32 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB4Q8WW32 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB4Q8WW32 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
HMGB4Q8WW32 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB4Q8WW32 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB4Q8WW32 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB4Q8WW32 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB4Q8WW32 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB4Q8WW32 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB4Q8WW32 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.47■□□□□ 0.55
HMGB4Q8WW32 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB4Q8WW32 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB4Q8WW32 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB4Q8WW32 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB4Q8WW32 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms