Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NKX2-3Q8TAU0 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NKX2-3Q8TAU0 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC21.85■■□□□ 1.09
NKX2-3Q8TAU0 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC21.85■■□□□ 1.09
NKX2-3Q8TAU0 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NKX2-3Q8TAU0 AC009113.1-201ENST00000570267 2443 ntBASIC21.85■■□□□ 1.09
NKX2-3Q8TAU0 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NKX2-3Q8TAU0 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
NKX2-3Q8TAU0 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC21.85■■□□□ 1.09
NKX2-3Q8TAU0 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NKX2-3Q8TAU0 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC21.85■■□□□ 1.09
NKX2-3Q8TAU0 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
NKX2-3Q8TAU0 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC21.85■■□□□ 1.09
NKX2-3Q8TAU0 AC010240.3-201ENST00000607688 395 ntBASIC21.85■■□□□ 1.09
NKX2-3Q8TAU0 ADK-206ENST00000541550 2222 ntTSL 2 BASIC21.85■■□□□ 1.09
NKX2-3Q8TAU0 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
NKX2-3Q8TAU0 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
NKX2-3Q8TAU0 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC21.85■■□□□ 1.09
NKX2-3Q8TAU0 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NKX2-3Q8TAU0 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NKX2-3Q8TAU0 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NKX2-3Q8TAU0 AL138781.2-201ENST00000617896 1843 ntBASIC21.85■■□□□ 1.09
NKX2-3Q8TAU0 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC21.85■■□□□ 1.09
NKX2-3Q8TAU0 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
NKX2-3Q8TAU0 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NKX2-3Q8TAU0 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NKX2-3Q8TAU0 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
NKX2-3Q8TAU0 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NKX2-3Q8TAU0 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
NKX2-3Q8TAU0 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC21.84■■□□□ 1.09
NKX2-3Q8TAU0 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC21.84■■□□□ 1.09
NKX2-3Q8TAU0 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NKX2-3Q8TAU0 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
NKX2-3Q8TAU0 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NKX2-3Q8TAU0 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NKX2-3Q8TAU0 AL022342.1-201ENST00000400363 863 ntBASIC21.84■■□□□ 1.09
NKX2-3Q8TAU0 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC21.84■■□□□ 1.09
NKX2-3Q8TAU0 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NKX2-3Q8TAU0 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
NKX2-3Q8TAU0 RASA4DP-201ENST00000460726 1199 ntBASIC21.84■■□□□ 1.09
NKX2-3Q8TAU0 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC21.84■■□□□ 1.09
NKX2-3Q8TAU0 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
NKX2-3Q8TAU0 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
NKX2-3Q8TAU0 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC21.84■■□□□ 1.09
NKX2-3Q8TAU0 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC21.83■■□□□ 1.09
NKX2-3Q8TAU0 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
NKX2-3Q8TAU0 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC21.83■■□□□ 1.09
NKX2-3Q8TAU0 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
NKX2-3Q8TAU0 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC21.83■■□□□ 1.09
NKX2-3Q8TAU0 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC21.83■■□□□ 1.09
NKX2-3Q8TAU0 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC21.83■■□□□ 1.09
NKX2-3Q8TAU0 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
NKX2-3Q8TAU0 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC21.83■■□□□ 1.09
NKX2-3Q8TAU0 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
NKX2-3Q8TAU0 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC21.83■■□□□ 1.09
NKX2-3Q8TAU0 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
NKX2-3Q8TAU0 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
NKX2-3Q8TAU0 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
NKX2-3Q8TAU0 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
NKX2-3Q8TAU0 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
NKX2-3Q8TAU0 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC21.83■■□□□ 1.09
NKX2-3Q8TAU0 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
NKX2-3Q8TAU0 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
NKX2-3Q8TAU0 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC21.83■■□□□ 1.09
NKX2-3Q8TAU0 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC21.83■■□□□ 1.09
NKX2-3Q8TAU0 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC21.83■■□□□ 1.09
NKX2-3Q8TAU0 MIR3917-201ENST00000580971 93 ntBASIC21.83■■□□□ 1.09
NKX2-3Q8TAU0 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC21.83■■□□□ 1.09
NKX2-3Q8TAU0 FGF14-AS2-201ENST00000606448 1074 ntBASIC21.83■■□□□ 1.09
NKX2-3Q8TAU0 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
NKX2-3Q8TAU0 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
NKX2-3Q8TAU0 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
NKX2-3Q8TAU0 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
NKX2-3Q8TAU0 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.83■■□□□ 1.08
NKX2-3Q8TAU0 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC21.82■■□□□ 1.08
NKX2-3Q8TAU0 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC21.82■■□□□ 1.08
NKX2-3Q8TAU0 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
NKX2-3Q8TAU0 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
NKX2-3Q8TAU0 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NKX2-3Q8TAU0 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
NKX2-3Q8TAU0 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC21.82■■□□□ 1.08
NKX2-3Q8TAU0 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
NKX2-3Q8TAU0 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC21.82■■□□□ 1.08
NKX2-3Q8TAU0 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC21.82■■□□□ 1.08
NKX2-3Q8TAU0 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC21.82■■□□□ 1.08
NKX2-3Q8TAU0 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
NKX2-3Q8TAU0 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NKX2-3Q8TAU0 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
NKX2-3Q8TAU0 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NKX2-3Q8TAU0 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NKX2-3Q8TAU0 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NKX2-3Q8TAU0 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
NKX2-3Q8TAU0 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NKX2-3Q8TAU0 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NKX2-3Q8TAU0 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NKX2-3Q8TAU0 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC21.81■■□□□ 1.08
NKX2-3Q8TAU0 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.81■■□□□ 1.08
NKX2-3Q8TAU0 SDHAP2-201ENST00000455183 2001 ntBASIC21.81■■□□□ 1.08
NKX2-3Q8TAU0 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC21.81■■□□□ 1.08
NKX2-3Q8TAU0 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC21.81■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms