Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
VPS13CQ709C8 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC15.37■□□□□ 0.05
VPS13CQ709C8 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13CQ709C8 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13CQ709C8 DNAJB3-202ENST00000449667 1266 ntBASIC15.37■□□□□ 0.05
VPS13CQ709C8 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC15.37■□□□□ 0.05
VPS13CQ709C8 FAM197Y3-203ENST00000618346 717 ntBASIC15.37■□□□□ 0.05
VPS13CQ709C8 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13CQ709C8 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC15.37■□□□□ 0.05
VPS13CQ709C8 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13CQ709C8 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13CQ709C8 AP005117.1-201ENST00000584346 1413 ntBASIC15.37■□□□□ 0.05
VPS13CQ709C8 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13CQ709C8 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
VPS13CQ709C8 RPS2P28-201ENST00000314255 741 ntBASIC15.37■□□□□ 0.05
VPS13CQ709C8 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13CQ709C8 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13CQ709C8 GUSBP12-201ENST00000513727 720 ntBASIC15.37■□□□□ 0.05
VPS13CQ709C8 MIR3197-201ENST00000582241 73 ntBASIC15.37■□□□□ 0.05
VPS13CQ709C8 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC15.37■□□□□ 0.05
VPS13CQ709C8 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC15.37■□□□□ 0.05
VPS13CQ709C8 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC15.37■□□□□ 0.05
VPS13CQ709C8 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC15.37■□□□□ 0.05
VPS13CQ709C8 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13CQ709C8 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VPS13CQ709C8 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC15.36■□□□□ 0.05
VPS13CQ709C8 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC15.36■□□□□ 0.05
VPS13CQ709C8 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
VPS13CQ709C8 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC15.36■□□□□ 0.05
VPS13CQ709C8 RFPL4AP1-201ENST00000530883 850 ntBASIC15.36■□□□□ 0.05
VPS13CQ709C8 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC15.36■□□□□ 0.05
VPS13CQ709C8 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC15.36■□□□□ 0.05
VPS13CQ709C8 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13CQ709C8 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC15.36■□□□□ 0.05
VPS13CQ709C8 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13CQ709C8 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC15.36■□□□□ 0.05
VPS13CQ709C8 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13CQ709C8 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC15.36■□□□□ 0.05
VPS13CQ709C8 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC15.36■□□□□ 0.05
VPS13CQ709C8 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC15.36■□□□□ 0.05
VPS13CQ709C8 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13CQ709C8 RN7SL606P-201ENST00000472779 293 ntBASIC15.36■□□□□ 0.05
VPS13CQ709C8 AC145285.3-201ENST00000564603 959 ntBASIC15.36■□□□□ 0.05
VPS13CQ709C8 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC15.36■□□□□ 0.05
VPS13CQ709C8 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC15.36■□□□□ 0.05
VPS13CQ709C8 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13CQ709C8 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13CQ709C8 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13CQ709C8 NARF-204ENST00000390006 1766 ntTSL 2 BASIC15.36■□□□□ 0.05
VPS13CQ709C8 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13CQ709C8 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13CQ709C8 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
VPS13CQ709C8 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC15.36■□□□□ 0.05
VPS13CQ709C8 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13CQ709C8 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC15.36■□□□□ 0.05
VPS13CQ709C8 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC15.36■□□□□ 0.05
VPS13CQ709C8 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC15.36■□□□□ 0.05
VPS13CQ709C8 AL355877.3-201ENST00000622820 899 ntBASIC15.36■□□□□ 0.05
VPS13CQ709C8 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13CQ709C8 AL357033.4-201ENST00000617703 1807 ntBASIC15.36■□□□□ 0.05
VPS13CQ709C8 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS13CQ709C8 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
VPS13CQ709C8 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
VPS13CQ709C8 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS13CQ709C8 UPF3AP3-201ENST00000420996 769 ntBASIC15.35■□□□□ 0.05
VPS13CQ709C8 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC15.35■□□□□ 0.05
VPS13CQ709C8 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC15.35■□□□□ 0.05
VPS13CQ709C8 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC15.35■□□□□ 0.05
VPS13CQ709C8 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC15.35■□□□□ 0.05
VPS13CQ709C8 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS13CQ709C8 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS13CQ709C8 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS13CQ709C8 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC15.35■□□□□ 0.05
VPS13CQ709C8 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC15.35■□□□□ 0.05
VPS13CQ709C8 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS13CQ709C8 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
VPS13CQ709C8 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS13CQ709C8 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS13CQ709C8 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
VPS13CQ709C8 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS13CQ709C8 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
VPS13CQ709C8 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS13CQ709C8 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC15.35■□□□□ 0.05
VPS13CQ709C8 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS13CQ709C8 AC112482.1-201ENST00000492080 688 ntBASIC15.35■□□□□ 0.05
VPS13CQ709C8 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
VPS13CQ709C8 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC15.35■□□□□ 0.05
VPS13CQ709C8 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
VPS13CQ709C8 COA5-202ENST00000409997 557 ntTSL 4 BASIC15.34■□□□□ 0.05
VPS13CQ709C8 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC15.34■□□□□ 0.05
VPS13CQ709C8 PPOX-214ENST00000535223 664 ntTSL 3 BASIC15.34■□□□□ 0.05
VPS13CQ709C8 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VPS13CQ709C8 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS13CQ709C8 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS13CQ709C8 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS13CQ709C8 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS13CQ709C8 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS13CQ709C8 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
VPS13CQ709C8 HIST2H3DP1-201ENST00000401004 416 ntBASIC15.34■□□□□ 0.05
VPS13CQ709C8 VENTXP7-201ENST00000475503 772 ntBASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms