Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 AC099398.1-201ENST00000567919 2776 ntBASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 AL121829.2-201ENST00000620908 328 ntBASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 AC134043.2-201ENST00000624206 2238 ntBASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 ANKRD18DP-204ENST00000455355 1975 ntBASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PPP4R4Q6NUP7 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 TFP1-202ENST00000475455 1573 ntBASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 NBPF21P-201ENST00000425093 1451 ntBASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 AC124016.1-201ENST00000609552 612 ntBASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
PPP4R4Q6NUP7 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
PPP4R4Q6NUP7 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.71■□□□□ 0.43
PPP4R4Q6NUP7 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.71■□□□□ 0.43
PPP4R4Q6NUP7 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PPP4R4Q6NUP7 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
PPP4R4Q6NUP7 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PPP4R4Q6NUP7 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
PPP4R4Q6NUP7 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC17.71■□□□□ 0.43
PPP4R4Q6NUP7 UBE2SP1-201ENST00000450587 669 ntBASIC17.71■□□□□ 0.43
PPP4R4Q6NUP7 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PPP4R4Q6NUP7 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.71■□□□□ 0.43
PPP4R4Q6NUP7 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC17.71■□□□□ 0.43
PPP4R4Q6NUP7 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PPP4R4Q6NUP7 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
PPP4R4Q6NUP7 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
PPP4R4Q6NUP7 CABP2-204ENST00000636477 941 ntTSL 5 BASIC17.71■□□□□ 0.43
PPP4R4Q6NUP7 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.71■□□□□ 0.43
PPP4R4Q6NUP7 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PPP4R4Q6NUP7 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
PPP4R4Q6NUP7 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PPP4R4Q6NUP7 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
PPP4R4Q6NUP7 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PPP4R4Q6NUP7 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.71■□□□□ 0.43
PPP4R4Q6NUP7 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
PPP4R4Q6NUP7 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC17.71■□□□□ 0.43
PPP4R4Q6NUP7 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PPP4R4Q6NUP7 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PPP4R4Q6NUP7 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC17.71■□□□□ 0.42
PPP4R4Q6NUP7 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.71■□□□□ 0.42
PPP4R4Q6NUP7 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
PPP4R4Q6NUP7 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.42
PPP4R4Q6NUP7 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 MAX-217ENST00000557277 728 ntTSL 3 BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 USP36-216ENST00000589424 970 ntTSL 5 BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 AC110285.5-201ENST00000611501 352 ntBASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
PPP4R4Q6NUP7 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms