Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
KRT39Q6A163 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
KRT39Q6A163 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC19.95■□□□□ 0.79
KRT39Q6A163 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
KRT39Q6A163 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
KRT39Q6A163 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
KRT39Q6A163 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
KRT39Q6A163 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
KRT39Q6A163 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
KRT39Q6A163 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
KRT39Q6A163 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
KRT39Q6A163 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
KRT39Q6A163 MIR149-201ENST00000384879 89 ntBASIC19.95■□□□□ 0.78
KRT39Q6A163 SEC1P-202ENST00000473944 940 ntBASIC19.95■□□□□ 0.78
KRT39Q6A163 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC19.95■□□□□ 0.78
KRT39Q6A163 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC19.95■□□□□ 0.78
KRT39Q6A163 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
KRT39Q6A163 LINC01023-201ENST00000606054 436 ntBASIC19.95■□□□□ 0.78
KRT39Q6A163 AC024243.1-201ENST00000609234 778 ntBASIC19.95■□□□□ 0.78
KRT39Q6A163 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
KRT39Q6A163 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC19.95■□□□□ 0.78
KRT39Q6A163 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
KRT39Q6A163 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
KRT39Q6A163 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC19.95■□□□□ 0.78
KRT39Q6A163 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
KRT39Q6A163 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
KRT39Q6A163 BICD1-207ENST00000551848 1962 ntBASIC19.95■□□□□ 0.78
KRT39Q6A163 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.95■□□□□ 0.78
KRT39Q6A163 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
KRT39Q6A163 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
KRT39Q6A163 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.95■□□□□ 0.78
KRT39Q6A163 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
KRT39Q6A163 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
KRT39Q6A163 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
KRT39Q6A163 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
KRT39Q6A163 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.94■□□□□ 0.78
KRT39Q6A163 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.94■□□□□ 0.78
KRT39Q6A163 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
KRT39Q6A163 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC19.94■□□□□ 0.78
KRT39Q6A163 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
KRT39Q6A163 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
KRT39Q6A163 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.94■□□□□ 0.78
KRT39Q6A163 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC19.94■□□□□ 0.78
KRT39Q6A163 AC009102.3-201ENST00000623118 1491 ntBASIC19.94■□□□□ 0.78
KRT39Q6A163 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
KRT39Q6A163 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
KRT39Q6A163 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
KRT39Q6A163 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
KRT39Q6A163 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.94■□□□□ 0.78
KRT39Q6A163 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
KRT39Q6A163 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC19.94■□□□□ 0.78
KRT39Q6A163 AL137013.1-201ENST00000432946 1228 ntBASIC19.94■□□□□ 0.78
KRT39Q6A163 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC19.94■□□□□ 0.78
KRT39Q6A163 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC19.94■□□□□ 0.78
KRT39Q6A163 ATP5G1P1-201ENST00000448724 379 ntBASIC19.94■□□□□ 0.78
KRT39Q6A163 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC19.94■□□□□ 0.78
KRT39Q6A163 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
KRT39Q6A163 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
KRT39Q6A163 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
KRT39Q6A163 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC19.94■□□□□ 0.78
KRT39Q6A163 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.94■□□□□ 0.78
KRT39Q6A163 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
KRT39Q6A163 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
KRT39Q6A163 AC135050.7-201ENST00000624508 2218 ntBASIC19.94■□□□□ 0.78
KRT39Q6A163 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
KRT39Q6A163 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
KRT39Q6A163 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
KRT39Q6A163 SDHAP2-201ENST00000455183 2001 ntBASIC19.93■□□□□ 0.78
KRT39Q6A163 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
KRT39Q6A163 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
KRT39Q6A163 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.93■□□□□ 0.78
KRT39Q6A163 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
KRT39Q6A163 UROS-202ENST00000368778 1556 ntTSL 2 BASIC19.93■□□□□ 0.78
KRT39Q6A163 AL162741.1-201ENST00000565563 1558 ntBASIC19.93■□□□□ 0.78
KRT39Q6A163 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
KRT39Q6A163 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
KRT39Q6A163 TERF1P1-201ENST00000311003 1181 ntBASIC19.93■□□□□ 0.78
KRT39Q6A163 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.93■□□□□ 0.78
KRT39Q6A163 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
KRT39Q6A163 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
KRT39Q6A163 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC19.93■□□□□ 0.78
KRT39Q6A163 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC19.93■□□□□ 0.78
KRT39Q6A163 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
KRT39Q6A163 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
KRT39Q6A163 AC009065.1-201ENST00000564055 1225 ntBASIC19.93■□□□□ 0.78
KRT39Q6A163 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC19.93■□□□□ 0.78
KRT39Q6A163 AC010240.3-201ENST00000607688 395 ntBASIC19.93■□□□□ 0.78
KRT39Q6A163 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC19.93■□□□□ 0.78
KRT39Q6A163 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
KRT39Q6A163 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
KRT39Q6A163 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
KRT39Q6A163 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
KRT39Q6A163 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
KRT39Q6A163 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC19.93■□□□□ 0.78
KRT39Q6A163 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
KRT39Q6A163 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.92■□□□□ 0.78
KRT39Q6A163 LGALS8-AS1-201ENST00000487567 1457 ntBASIC19.92■□□□□ 0.78
KRT39Q6A163 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
KRT39Q6A163 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
KRT39Q6A163 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms