Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
UBR4Q5T4S7 AC112777.1-201ENST00000540175 1423 ntBASIC10.05□□□□□ -0.8
UBR4Q5T4S7 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC10.05□□□□□ -0.8
UBR4Q5T4S7 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
UBR4Q5T4S7 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
UBR4Q5T4S7 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
UBR4Q5T4S7 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
UBR4Q5T4S7 SERF2-206ENST00000409291 807 ntTSL 3 BASIC10.05□□□□□ -0.8
UBR4Q5T4S7 BX005266.1-201ENST00000473402 457 ntBASIC10.05□□□□□ -0.8
UBR4Q5T4S7 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC10.05□□□□□ -0.8
UBR4Q5T4S7 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC10.05□□□□□ -0.8
UBR4Q5T4S7 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC10.05□□□□□ -0.8
UBR4Q5T4S7 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC10.05□□□□□ -0.8
UBR4Q5T4S7 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC10.05□□□□□ -0.8
UBR4Q5T4S7 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
UBR4Q5T4S7 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
UBR4Q5T4S7 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
UBR4Q5T4S7 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
UBR4Q5T4S7 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC10.05□□□□□ -0.8
UBR4Q5T4S7 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC10.05□□□□□ -0.8
UBR4Q5T4S7 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC10.05□□□□□ -0.8
UBR4Q5T4S7 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
UBR4Q5T4S7 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC10.05□□□□□ -0.8
UBR4Q5T4S7 AC136632.2-201ENST00000512891 861 ntBASIC10.05□□□□□ -0.8
UBR4Q5T4S7 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
UBR4Q5T4S7 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
UBR4Q5T4S7 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
UBR4Q5T4S7 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
UBR4Q5T4S7 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC10.05□□□□□ -0.8
UBR4Q5T4S7 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 RIN3-211ENST00000557762 517 ntTSL 3 BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 IGHV3OR16-6-201ENST00000568775 360 ntBASIC10.04□□□□□ -0.8
UBR4Q5T4S7 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 AC011467.2-201ENST00000598425 242 ntBASIC10.04□□□□□ -0.8
UBR4Q5T4S7 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 AL138831.2-201ENST00000606564 490 ntBASIC10.04□□□□□ -0.8
UBR4Q5T4S7 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 AC092978.1-202ENST00000637590 1327 ntBASIC10.04□□□□□ -0.8
UBR4Q5T4S7 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 TEN1-204ENST00000588202 862 ntTSL 3 BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
UBR4Q5T4S7 AC138969.3-201ENST00000546612 1459 ntBASIC10.04□□□□□ -0.8
UBR4Q5T4S7 AC138932.2-201ENST00000548268 1459 ntBASIC10.04□□□□□ -0.8
UBR4Q5T4S7 AC126755.4-201ENST00000549796 1459 ntBASIC10.04□□□□□ -0.8
UBR4Q5T4S7 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
UBR4Q5T4S7 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC10.03□□□□□ -0.8
UBR4Q5T4S7 TK1-204ENST00000590430 683 ntTSL 3 BASIC10.03□□□□□ -0.8
UBR4Q5T4S7 AL139288.1-201ENST00000623748 933 ntBASIC10.03□□□□□ -0.8
UBR4Q5T4S7 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC10.03□□□□□ -0.8
UBR4Q5T4S7 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC10.03□□□□□ -0.8
UBR4Q5T4S7 TDG-209ENST00000544861 1387 ntTSL 2 BASIC10.03□□□□□ -0.8
UBR4Q5T4S7 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC10.03□□□□□ -0.8
UBR4Q5T4S7 WRB-204ENST00000398753 699 ntTSL 3 BASIC10.03□□□□□ -0.8
UBR4Q5T4S7 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
UBR4Q5T4S7 RPL28-209ENST00000560055 670 ntTSL 3 BASIC10.03□□□□□ -0.8
UBR4Q5T4S7 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC10.03□□□□□ -0.8
UBR4Q5T4S7 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC10.03□□□□□ -0.8
UBR4Q5T4S7 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
UBR4Q5T4S7 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
UBR4Q5T4S7 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC10.03□□□□□ -0.8
UBR4Q5T4S7 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC10.03□□□□□ -0.8
UBR4Q5T4S7 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC10.03□□□□□ -0.8
UBR4Q5T4S7 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC10.03□□□□□ -0.8
UBR4Q5T4S7 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
UBR4Q5T4S7 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC10.03□□□□□ -0.8
UBR4Q5T4S7 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
UBR4Q5T4S7 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC10.03□□□□□ -0.8
UBR4Q5T4S7 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
UBR4Q5T4S7 GLI4-203ENST00000517468 963 ntTSL 5 BASIC10.03□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms