Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
SOX4Q06945 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
SOX4Q06945 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
SOX4Q06945 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SOX4Q06945 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SOX4Q06945 DRAXINP1-201ENST00000437611 948 ntBASIC19.71■□□□□ 0.75
SOX4Q06945 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
SOX4Q06945 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC19.71■□□□□ 0.75
SOX4Q06945 SKP2-204ENST00000508514 821 ntTSL 3 BASIC19.71■□□□□ 0.75
SOX4Q06945 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC19.71■□□□□ 0.75
SOX4Q06945 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC19.71■□□□□ 0.75
SOX4Q06945 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
SOX4Q06945 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC19.71■□□□□ 0.75
SOX4Q06945 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
SOX4Q06945 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.71■□□□□ 0.75
SOX4Q06945 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.71■□□□□ 0.75
SOX4Q06945 AP000974.1-201ENST00000623909 2387 ntBASIC19.71■□□□□ 0.75
SOX4Q06945 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SOX4Q06945 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SOX4Q06945 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
SOX4Q06945 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
SOX4Q06945 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.71■□□□□ 0.74
SOX4Q06945 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SOX4Q06945 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SOX4Q06945 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SOX4Q06945 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SOX4Q06945 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SOX4Q06945 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SOX4Q06945 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SOX4Q06945 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
SOX4Q06945 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SOX4Q06945 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SOX4Q06945 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC19.7■□□□□ 0.74
SOX4Q06945 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC19.7■□□□□ 0.74
SOX4Q06945 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SOX4Q06945 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.7■□□□□ 0.74
SOX4Q06945 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC19.7■□□□□ 0.74
SOX4Q06945 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC19.7■□□□□ 0.74
SOX4Q06945 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SOX4Q06945 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.7■□□□□ 0.74
SOX4Q06945 IL11-204ENST00000590625 1028 ntTSL 2 BASIC19.7■□□□□ 0.74
SOX4Q06945 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SOX4Q06945 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC19.7■□□□□ 0.74
SOX4Q06945 AC004263.2-201ENST00000617183 678 ntBASIC19.7■□□□□ 0.74
SOX4Q06945 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC19.7■□□□□ 0.74
SOX4Q06945 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
SOX4Q06945 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC19.7■□□□□ 0.74
SOX4Q06945 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SOX4Q06945 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SOX4Q06945 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SOX4Q06945 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.7■□□□□ 0.74
SOX4Q06945 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SOX4Q06945 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SOX4Q06945 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SOX4Q06945 AL353692.3-201ENST00000407031 1396 ntBASIC19.7■□□□□ 0.74
SOX4Q06945 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
SOX4Q06945 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SOX4Q06945 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SOX4Q06945 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SOX4Q06945 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SOX4Q06945 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
SOX4Q06945 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
SOX4Q06945 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SOX4Q06945 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SOX4Q06945 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SOX4Q06945 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
SOX4Q06945 CIB2-208ENST00000560618 804 ntTSL 2 BASIC19.69■□□□□ 0.74
SOX4Q06945 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC19.69■□□□□ 0.74
SOX4Q06945 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SOX4Q06945 AL121894.2-201ENST00000602977 491 ntBASIC19.69■□□□□ 0.74
SOX4Q06945 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
SOX4Q06945 NARF-204ENST00000390006 1766 ntTSL 2 BASIC19.69■□□□□ 0.74
SOX4Q06945 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC19.69■□□□□ 0.74
SOX4Q06945 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC19.69■□□□□ 0.74
SOX4Q06945 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SOX4Q06945 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SOX4Q06945 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.69■□□□□ 0.74
SOX4Q06945 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC19.68■□□□□ 0.74
SOX4Q06945 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.68■□□□□ 0.74
SOX4Q06945 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SOX4Q06945 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
SOX4Q06945 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SOX4Q06945 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SOX4Q06945 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SOX4Q06945 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SOX4Q06945 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SOX4Q06945 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SOX4Q06945 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SOX4Q06945 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SOX4Q06945 TOB2P1-201ENST00000469761 992 ntBASIC19.68■□□□□ 0.74
SOX4Q06945 RN7SL606P-201ENST00000472779 293 ntBASIC19.68■□□□□ 0.74
SOX4Q06945 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC19.68■□□□□ 0.74
SOX4Q06945 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC19.68■□□□□ 0.74
SOX4Q06945 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC19.68■□□□□ 0.74
SOX4Q06945 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC19.68■□□□□ 0.74
SOX4Q06945 MIR3652-201ENST00000579335 131 ntBASIC19.68■□□□□ 0.74
SOX4Q06945 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.68■□□□□ 0.74
SOX4Q06945 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC19.68■□□□□ 0.74
SOX4Q06945 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SOX4Q06945 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms