Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX3P41225 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX3P41225 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX3P41225 CD70-202ENST00000423145 881 ntTSL 2 BASIC17.39■□□□□ 0.37
SOX3P41225 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX3P41225 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC17.39■□□□□ 0.37
SOX3P41225 BX664615.1-201ENST00000443558 458 ntBASIC17.39■□□□□ 0.37
SOX3P41225 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX3P41225 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC17.39■□□□□ 0.37
SOX3P41225 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SOX3P41225 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
SOX3P41225 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.39■□□□□ 0.37
SOX3P41225 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
SOX3P41225 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.39■□□□□ 0.37
SOX3P41225 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
SOX3P41225 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.39■□□□□ 0.37
SOX3P41225 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
SOX3P41225 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX3P41225 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SOX3P41225 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX3P41225 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX3P41225 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SOX3P41225 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.38■□□□□ 0.37
SOX3P41225 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
SOX3P41225 KRT8P3-201ENST00000519669 1449 ntBASIC17.38■□□□□ 0.37
SOX3P41225 HCG11-201ENST00000411553 5696 ntBASIC17.38■□□□□ 0.37
SOX3P41225 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.38■□□□□ 0.37
SOX3P41225 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.38■□□□□ 0.37
SOX3P41225 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
SOX3P41225 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.38■□□□□ 0.37
SOX3P41225 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SOX3P41225 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
SOX3P41225 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
SOX3P41225 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
SOX3P41225 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SOX3P41225 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SOX3P41225 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC17.38■□□□□ 0.37
SOX3P41225 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SOX3P41225 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.38■□□□□ 0.37
SOX3P41225 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC17.38■□□□□ 0.37
SOX3P41225 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SOX3P41225 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC17.38■□□□□ 0.37
SOX3P41225 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SOX3P41225 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.38■□□□□ 0.37
SOX3P41225 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SOX3P41225 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SOX3P41225 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SOX3P41225 GPAT2P1-201ENST00000444924 1672 ntBASIC17.38■□□□□ 0.37
SOX3P41225 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.38■□□□□ 0.37
SOX3P41225 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
SOX3P41225 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SOX3P41225 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SOX3P41225 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SOX3P41225 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.37■□□□□ 0.37
SOX3P41225 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SOX3P41225 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SOX3P41225 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SOX3P41225 FP475955.4-201ENST00000623131 1990 ntBASIC17.37■□□□□ 0.37
SOX3P41225 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SOX3P41225 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SOX3P41225 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SOX3P41225 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SOX3P41225 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SOX3P41225 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SOX3P41225 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
SOX3P41225 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SOX3P41225 AC117947.1-201ENST00000427448 529 ntBASIC17.37■□□□□ 0.37
SOX3P41225 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SOX3P41225 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
SOX3P41225 DUX4L26-201ENST00000489078 1255 ntBASIC17.37■□□□□ 0.37
SOX3P41225 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC17.37■□□□□ 0.37
SOX3P41225 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SOX3P41225 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.37■□□□□ 0.37
SOX3P41225 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC17.37■□□□□ 0.37
SOX3P41225 AC139887.4-201ENST00000607877 719 ntBASIC17.37■□□□□ 0.37
SOX3P41225 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
SOX3P41225 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC17.37■□□□□ 0.37
SOX3P41225 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.37■□□□□ 0.37
SOX3P41225 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
SOX3P41225 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
SOX3P41225 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.37■□□□□ 0.37
SOX3P41225 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC17.37■□□□□ 0.37
SOX3P41225 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.37■□□□□ 0.37
SOX3P41225 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.37■□□□□ 0.37
SOX3P41225 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SOX3P41225 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.37■□□□□ 0.37
SOX3P41225 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SOX3P41225 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SOX3P41225 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SOX3P41225 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SOX3P41225 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SOX3P41225 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SOX3P41225 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SOX3P41225 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SOX3P41225 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
SOX3P41225 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SOX3P41225 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SOX3P41225 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SOX3P41225 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SOX3P41225 AL031598.1-201ENST00000561511 1773 ntBASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms