Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 TSPY7P-201ENST00000431358 1114 ntBASIC18.61■□□□□ 0.57
CCNFP41002 SLC25A6P5-201ENST00000435663 894 ntBASIC18.61■□□□□ 0.57
CCNFP41002 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCNFP41002 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCNFP41002 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.61■□□□□ 0.57
CCNFP41002 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.61■□□□□ 0.57
CCNFP41002 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.61■□□□□ 0.57
CCNFP41002 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC18.61■□□□□ 0.57
CCNFP41002 AP000692.2-201ENST00000608391 879 ntBASIC18.61■□□□□ 0.57
CCNFP41002 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CCNFP41002 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCNFP41002 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCNFP41002 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCNFP41002 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.6■□□□□ 0.57
CCNFP41002 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCNFP41002 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCNFP41002 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCNFP41002 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
CCNFP41002 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CCNFP41002 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCNFP41002 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCNFP41002 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CCNFP41002 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CCNFP41002 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCNFP41002 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCNFP41002 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCNFP41002 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCNFP41002 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCNFP41002 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.6■□□□□ 0.57
CCNFP41002 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18.6■□□□□ 0.57
CCNFP41002 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC18.6■□□□□ 0.57
CCNFP41002 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.6■□□□□ 0.57
CCNFP41002 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.6■□□□□ 0.57
CCNFP41002 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCNFP41002 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCNFP41002 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCNFP41002 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCNFP41002 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
CCNFP41002 AL357033.4-201ENST00000617703 1807 ntBASIC18.6■□□□□ 0.57
CCNFP41002 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCNFP41002 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.6■□□□□ 0.57
CCNFP41002 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.6■□□□□ 0.57
CCNFP41002 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCNFP41002 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCNFP41002 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
CCNFP41002 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.59■□□□□ 0.57
CCNFP41002 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCNFP41002 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCNFP41002 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCNFP41002 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCNFP41002 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
CCNFP41002 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.59■□□□□ 0.57
CCNFP41002 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCNFP41002 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC18.59■□□□□ 0.57
CCNFP41002 GRAMD4P8-201ENST00000605465 1115 ntBASIC18.59■□□□□ 0.57
CCNFP41002 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCNFP41002 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CCNFP41002 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCNFP41002 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CCNFP41002 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.59■□□□□ 0.57
CCNFP41002 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCNFP41002 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.59■□□□□ 0.57
CCNFP41002 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.59■□□□□ 0.57
CCNFP41002 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.59■□□□□ 0.57
CCNFP41002 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.59■□□□□ 0.57
CCNFP41002 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCNFP41002 AC008556.1-201ENST00000610908 2040 ntBASIC18.59■□□□□ 0.57
CCNFP41002 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCNFP41002 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.58■□□□□ 0.57
CCNFP41002 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CCNFP41002 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
CCNFP41002 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CCNFP41002 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCNFP41002 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.58■□□□□ 0.57
CCNFP41002 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCNFP41002 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC18.58■□□□□ 0.56
CCNFP41002 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.58■□□□□ 0.56
CCNFP41002 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
CCNFP41002 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.58■□□□□ 0.56
CCNFP41002 AC008040.2-201ENST00000461049 708 ntBASIC18.58■□□□□ 0.56
CCNFP41002 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.58■□□□□ 0.56
CCNFP41002 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC18.58■□□□□ 0.56
CCNFP41002 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CCNFP41002 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
CCNFP41002 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCNFP41002 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.58■□□□□ 0.56
CCNFP41002 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
CCNFP41002 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCNFP41002 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCNFP41002 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.58■□□□□ 0.56
CCNFP41002 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCNFP41002 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCNFP41002 GNAS-203ENST00000306120 1878 ntBASIC18.58■□□□□ 0.56
CCNFP41002 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CCNFP41002 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.58■□□□□ 0.56
CCNFP41002 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCNFP41002 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
CCNFP41002 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCNFP41002 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.57■□□□□ 0.56
CCNFP41002 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms