Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC14.3□□□□□ -0.12
HOXD3P31249 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC14.3□□□□□ -0.12
HOXD3P31249 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC14.3□□□□□ -0.12
HOXD3P31249 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC14.3□□□□□ -0.12
HOXD3P31249 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC14.3□□□□□ -0.12
HOXD3P31249 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
HOXD3P31249 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
HOXD3P31249 AC024243.1-201ENST00000609234 778 ntBASIC14.3□□□□□ -0.12
HOXD3P31249 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD3P31249 AC092119.3-201ENST00000612618 583 ntBASIC14.3□□□□□ -0.12
HOXD3P31249 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC14.3□□□□□ -0.12
HOXD3P31249 BCL10-202ENST00000620248 774 ntTSL 5 BASIC14.3□□□□□ -0.12
HOXD3P31249 AL691432.3-201ENST00000621860 400 ntBASIC14.3□□□□□ -0.12
HOXD3P31249 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD3P31249 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD3P31249 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD3P31249 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC14.3□□□□□ -0.12
HOXD3P31249 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD3P31249 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD3P31249 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
HOXD3P31249 KRT8P7-201ENST00000533003 1432 ntBASIC14.3□□□□□ -0.12
HOXD3P31249 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC14.3□□□□□ -0.12
HOXD3P31249 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD3P31249 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC14.3□□□□□ -0.12
HOXD3P31249 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD3P31249 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD3P31249 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC14.3□□□□□ -0.12
HOXD3P31249 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD3P31249 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD3P31249 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD3P31249 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD3P31249 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD3P31249 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC14.29□□□□□ -0.12
HOXD3P31249 AC006333.2-201ENST00000607957 2099 ntBASIC14.29□□□□□ -0.12
HOXD3P31249 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD3P31249 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD3P31249 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD3P31249 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD3P31249 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD3P31249 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD3P31249 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
HOXD3P31249 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC14.29□□□□□ -0.12
HOXD3P31249 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD3P31249 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD3P31249 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD3P31249 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC14.29□□□□□ -0.12
HOXD3P31249 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD3P31249 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD3P31249 LY6E-213ENST00000522528 606 ntTSL 3 BASIC14.29□□□□□ -0.12
HOXD3P31249 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC14.29□□□□□ -0.12
HOXD3P31249 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC14.29□□□□□ -0.12
HOXD3P31249 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD3P31249 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC14.29□□□□□ -0.12
HOXD3P31249 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD3P31249 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD3P31249 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD3P31249 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC14.29□□□□□ -0.12
HOXD3P31249 MTMR9LP-203ENST00000426597 1545 ntBASIC14.29□□□□□ -0.12
HOXD3P31249 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD3P31249 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
HOXD3P31249 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
HOXD3P31249 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD3P31249 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD3P31249 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD3P31249 NFYC-AS1-201ENST00000606277 1687 ntBASIC14.29□□□□□ -0.12
HOXD3P31249 Z98044.1-201ENST00000632503 1764 ntBASIC14.29□□□□□ -0.12
HOXD3P31249 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD3P31249 AC020763.4-201ENST00000623414 4170 ntBASIC14.29□□□□□ -0.12
HOXD3P31249 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC14.29□□□□□ -0.12
HOXD3P31249 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC14.29□□□□□ -0.12
HOXD3P31249 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXD3P31249 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD3P31249 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD3P31249 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD3P31249 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD3P31249 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD3P31249 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
HOXD3P31249 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC14.28□□□□□ -0.12
HOXD3P31249 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD3P31249 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD3P31249 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD3P31249 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD3P31249 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD3P31249 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC14.28□□□□□ -0.12
HOXD3P31249 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD3P31249 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD3P31249 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC14.28□□□□□ -0.12
HOXD3P31249 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD3P31249 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD3P31249 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC14.28□□□□□ -0.12
HOXD3P31249 AC034232.1-201ENST00000506026 1064 ntBASIC14.28□□□□□ -0.12
HOXD3P31249 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC14.28□□□□□ -0.12
HOXD3P31249 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD3P31249 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC14.28□□□□□ -0.12
HOXD3P31249 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
HOXD3P31249 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD3P31249 HOXB1-202ENST00000577092 1414 ntBASIC14.28□□□□□ -0.12
HOXD3P31249 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
HOXD3P31249 IRF5-214ENST00000613821 595 ntTSL 5 BASIC14.28□□□□□ -0.12
HOXD3P31249 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms