Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL5A3P25940 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
COL5A3P25940 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC23.24■■□□□ 1.31
COL5A3P25940 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL5A3P25940 RPS2P1-201ENST00000434010 821 ntBASIC23.24■■□□□ 1.31
COL5A3P25940 HMGN1P19-201ENST00000436976 333 ntBASIC23.24■■□□□ 1.31
COL5A3P25940 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL5A3P25940 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC23.24■■□□□ 1.31
COL5A3P25940 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL5A3P25940 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC23.24■■□□□ 1.31
COL5A3P25940 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL5A3P25940 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL5A3P25940 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL5A3P25940 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
COL5A3P25940 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC23.23■■□□□ 1.31
COL5A3P25940 FAM220CP-201ENST00000395253 831 ntBASIC23.23■■□□□ 1.31
COL5A3P25940 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC23.23■■□□□ 1.31
COL5A3P25940 DANCR-204ENST00000444958 709 ntTSL 3 BASIC23.23■■□□□ 1.31
COL5A3P25940 ABCD1P5-201ENST00000445663 754 ntBASIC23.23■■□□□ 1.31
COL5A3P25940 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC23.23■■□□□ 1.31
COL5A3P25940 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC23.23■■□□□ 1.31
COL5A3P25940 PNMT-203ENST00000581428 677 ntTSL 2 BASIC23.23■■□□□ 1.31
COL5A3P25940 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
COL5A3P25940 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
COL5A3P25940 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC23.23■■□□□ 1.31
COL5A3P25940 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
COL5A3P25940 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
COL5A3P25940 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
COL5A3P25940 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC23.23■■□□□ 1.31
COL5A3P25940 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
COL5A3P25940 MED15P5-201ENST00000423150 992 ntBASIC23.22■■□□□ 1.31
COL5A3P25940 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC23.22■■□□□ 1.31
COL5A3P25940 AC009533.2-201ENST00000543664 586 ntBASIC23.22■■□□□ 1.31
COL5A3P25940 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC23.22■■□□□ 1.31
COL5A3P25940 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC23.22■■□□□ 1.31
COL5A3P25940 AC025062.2-201ENST00000605477 670 ntBASIC23.22■■□□□ 1.31
COL5A3P25940 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC23.22■■□□□ 1.31
COL5A3P25940 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC23.22■■□□□ 1.31
COL5A3P25940 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL5A3P25940 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC23.22■■□□□ 1.31
COL5A3P25940 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC23.22■■□□□ 1.31
COL5A3P25940 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL5A3P25940 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
COL5A3P25940 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC23.22■■□□□ 1.31
COL5A3P25940 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL5A3P25940 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
COL5A3P25940 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC23.22■■□□□ 1.31
COL5A3P25940 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
COL5A3P25940 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL5A3P25940 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL5A3P25940 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL5A3P25940 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL5A3P25940 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
COL5A3P25940 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC23.22■■□□□ 1.31
COL5A3P25940 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC23.22■■□□□ 1.31
COL5A3P25940 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC23.22■■□□□ 1.31
COL5A3P25940 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC23.22■■□□□ 1.31
COL5A3P25940 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
COL5A3P25940 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC23.22■■□□□ 1.31
COL5A3P25940 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC23.22■■□□□ 1.31
COL5A3P25940 Z83851.2-201ENST00000609564 659 ntBASIC23.22■■□□□ 1.31
COL5A3P25940 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
COL5A3P25940 AC009154.2-201ENST00000621177 724 ntBASIC23.22■■□□□ 1.31
COL5A3P25940 AC008735.5-201ENST00000623544 497 ntBASIC23.22■■□□□ 1.31
COL5A3P25940 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC23.22■■□□□ 1.31
COL5A3P25940 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL5A3P25940 SDHAP2-201ENST00000455183 2001 ntBASIC23.21■■□□□ 1.31
COL5A3P25940 AC125634.1-201ENST00000438758 1403 ntBASIC23.21■■□□□ 1.31
COL5A3P25940 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
COL5A3P25940 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL5A3P25940 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC23.21■■□□□ 1.31
COL5A3P25940 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC23.21■■□□□ 1.31
COL5A3P25940 OR7E14P-202ENST00000530490 1290 ntBASIC23.21■■□□□ 1.31
COL5A3P25940 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC23.21■■□□□ 1.31
COL5A3P25940 FAM197Y3-203ENST00000618346 717 ntBASIC23.21■■□□□ 1.31
COL5A3P25940 AC055717.3-201ENST00000622967 595 ntBASIC23.21■■□□□ 1.31
COL5A3P25940 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC23.21■■□□□ 1.31
COL5A3P25940 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
COL5A3P25940 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL5A3P25940 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC23.21■■□□□ 1.31
COL5A3P25940 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
COL5A3P25940 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL5A3P25940 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC23.21■■□□□ 1.31
COL5A3P25940 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC23.2■■□□□ 1.31
COL5A3P25940 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.31
COL5A3P25940 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.31
COL5A3P25940 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
COL5A3P25940 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL5A3P25940 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL5A3P25940 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC23.2■■□□□ 1.3
COL5A3P25940 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC23.2■■□□□ 1.3
COL5A3P25940 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC23.2■■□□□ 1.3
COL5A3P25940 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
COL5A3P25940 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC23.2■■□□□ 1.3
COL5A3P25940 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
COL5A3P25940 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC23.2■■□□□ 1.3
COL5A3P25940 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC23.2■■□□□ 1.3
COL5A3P25940 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC23.2■■□□□ 1.3
COL5A3P25940 ZNF259P1-201ENST00000407656 1365 ntBASIC23.2■■□□□ 1.3
COL5A3P25940 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms